Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq24624 497 1e-135 seq29915 334 9e-87 seq32525 309 3e-79 seq6217 140 4e-28 seq20192 100 3e-16 seq29178 82.4 9e-11 >seq24624 Length=74067 Score = 497 bits (550), Expect = 1e-135 Identities = 639/879 (73%), Gaps = 2/879 (0%) Strand=Plus/Minus Query 168596 TTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTA 168655 ||||||||||| || | || ||||| || || || | || ||||| | || ||||| Sbjct 18437 TTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTA 18378 Query 168656 ATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTA 168715 | ||||||||||| ||||| || ||||| || |||| |||| || || ||| | Sbjct 18377 CTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTG 18318 Query 168716 CACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCT 168775 ||||| || || ||||||||||| || | | ||||| ||||||||||| || |||||| Sbjct 18317 CACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAACGGCGGTCCT 18258 Query 168776 TACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGG 168835 || | | | || | |||||| || | || | || ||||||||| | ||||| Sbjct 18257 TATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGG 18198 Query 168836 GAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGT 168894 ||| ||| | | | | |||||| | |||||||| |||||| |||||||| || || Sbjct 18197 GAACTTAGTTTTC-GTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGT 18139 Query 168895 ATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGG 168954 | || || ||| || ||| | | || || |||||||||| || || ||||| Sbjct 18138 TGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGG 18079 Query 168955 TATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAA 169014 |||||||||||||||||| || || | ||| || ||| | ||||| || || |||| || Sbjct 18078 TATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAGGCTAAGCATAA 18019 Query 169015 CATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATT 169074 |||||||||||||| || || ||| | ||||| ||| | ||||| || || |||| Sbjct 18018 TATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGCGGCTCCTTATT 17959 Query 169075 CTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGA 169134 | || ||||||||||| | ||||| ||| | | ||||| || || || || | || Sbjct 17958 CAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGA 17899 Query 169135 ATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGC 169194 |||| || | ||||||| || |||||||| |||||||||||||||||||| || || Sbjct 17898 ATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGC 17839 Query 169195 ACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCT 169254 ||||| || || || |||| |||||||| ||||||||||||||||| || | | | Sbjct 17838 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTT 17779 Query 169255 TCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTG 169314 || |||||| |||| | | || || ||| || | ||||| ||| || | |||||| | Sbjct 17778 ACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAG 17719 Query 169315 TACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGG 169374 || ||||| |||||||| || || || || || |||||||| || || ||| | | || Sbjct 17718 CACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGG 17659 Query 169375 TAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAAT 169434 | | ||| ||| |||| ||| | ||||| |||| |||||||||||||||||||| Sbjct 17658 TCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAAT 17599 Query 169435 GCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 |||||| ||||| ||||| || ||||| ||||| |||| Sbjct 17598 GCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 17560 >seq29915 Length=314255 Score = 334 bits (370), Expect = 9e-87 Identities = 432/594 (73%), Gaps = 2/594 (0%) Strand=Plus/Plus Query 168677 TCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAA 168736 || ||||| || |||| |||| || || ||| | ||||| || || ||||||||| Sbjct 233364 TCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAA 233423 Query 168737 GCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCAC 168796 || || | || ||||| ||||||||||| || | |||||| | | | | | ||| Sbjct 233424 GCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACAC 233483 Query 168797 TTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACAGACTAGG 168855 ||| || | || | || ||||||||| | |||||||| ||| | | | | || Sbjct 233484 TTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTC-GTTTGGG 233542 Query 168856 TATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATT 168915 |||| | |||||||| |||||| |||||||| || || | || || ||| || || Sbjct 233543 TATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTT 233602 Query 168916 CCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGG 168975 | | | || || |||||||||| || || ||||||||||||||||||||||| || Sbjct 233603 CTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGG 233662 Query 168976 AACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCA 169035 || ||||| || ||| | ||||| || || ||||| || |||||||||||||| || || Sbjct 233663 TACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCA 233722 Query 169036 TATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACT 169095 ||| ||| ||||| ||| | ||||| || || |||||| || ||||||||||| | Sbjct 233723 CATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTT 233782 Query 169096 TGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAA 169155 ||||| ||| | | ||||| || || || || | |||||| || | ||||||| Sbjct 233783 GGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAG 233842 Query 169156 GTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATT 169215 || |||||||| |||||||||||||||||||| || || ||||| || || || |||| Sbjct 233843 ATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATT 233902 Query 169216 AATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||||||| ||||||||||||||||| || | | | || |||||| |||| Sbjct 233903 GATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 233956 >seq32525 Length=219324 Score = 309 bits (342), Expect = 3e-79 Identities = 479/679 (71%), Gaps = 4/679 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | || | ||||| |||| ||||| ||||| || Sbjct 125563 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 125622 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| || |||||| || ||| | | ||| || ||| | || ||||||||||| || Sbjct 125623 ATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTTATTGCTGCCCC 125681 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | || ||||| | ||||||||||| Sbjct 125682 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 125741 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 ||||| || ||||| || |||| |||| || || ||| | ||||| || || || Sbjct 125742 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTAT 125801 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||| ||| || | | ||||| |||||||| || || |||||||| | | | | Sbjct 125802 TTGGGGAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGT 125861 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACA 168848 | |||||| || | || | || ||||||||| | |||||||| ||| | | Sbjct 125862 TCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTC- 125920 Query 168849 GACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTG 168908 | | |||||| | |||||||| |||||| |||||||| || || | || || || Sbjct 125921 GTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTG 125980 Query 168909 CAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAA 168968 | || || | | || || |||||||||| || || ||||||||||||||||||| Sbjct 125981 CTGTTTTTTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAA 126040 Query 168969 TTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATC 169028 |||| | || ||||| || ||| | ||||| || || |||| || ||||||||||||| Sbjct 126041 TTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCATC 126100 Query 169029 CCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATG 169088 | || || ||| ||| ||||| ||| | ||||| || || |||||| || ||| ||| Sbjct 126101 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTATG 126160 Query 169089 GTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATG 169148 |||| | ||||| | | | | ||||| || || || || | |||||| || | | Sbjct 126161 GTTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 126220 Query 169149 GTTACAAGTTCGGTCAAGA 169167 |||||| || |||||||| Sbjct 126221 GTTACAGATTTGGTCAAGA 126239 >seq6217 Length=83728 Score = 140 bits (154), Expect = 4e-28 Identities = 191/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 168907 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966 ||| || ||| | | || || |||||||||| || || ||||||||||||||||| Sbjct 30545 TGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGG 30604 Query 168967 AATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 169026 |||||| | || ||||| || ||| | ||||| || || |||| || ||||||||||| Sbjct 30605 AATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCA 30664 Query 169027 TCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGC- 169085 ||| || || ||| ||| ||||| ||| | ||||| || || |||||| || |||| Sbjct 30665 TCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 30724 Query 169086 -----ATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCA 169140 ||||||| | ||||| | | | | ||||| || || || || | |||||| Sbjct 30725 TGGTTATGGTTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 30784 Query 169141 GAACTATGGTTACAAGTTCGGTCAAGA 169167 || | ||||||| || |||||||| Sbjct 30785 TAATGAAGGTTACAGATTTGGTCAAGA 30811 >seq20192 Length=443579 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 168977 ACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCAT 169036 || ||||| || ||| | ||||| || || ||||| || |||||||||||||| || || Sbjct 96325 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 96266 Query 169037 ATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTT 169096 ||| ||| ||||| ||| | ||||| || || |||||| || ||||||||||| | Sbjct 96265 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 96206 Query 169097 GTAACATCTTCTCTAATCAG 169116 ||||| ||| | | ||||| Sbjct 96205 GTAACTTCTAGTTTGATCAG 96186 >seq29178 Length=161839 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||||| || |||||||| |||||||| |||||||||| | | ||||| || || Sbjct 119043 GGTTACATATTTGGTCAAGAGAAAGAAACCAATAATATTGTAGTCGTTCATGGTTATTTT 119102 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 || ||| || ||||| ||||||||||||||||| || Sbjct 119103 GGCCCATTGATATTCCAATATGCAAGTTTCAACAATTC 119140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564207568401600