Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq24624 439 4e-118 seq29915 298 8e-76 seq32525 293 3e-74 seq6217 129 9e-25 seq20192 109 8e-19 >seq24624 Length=74067 Score = 439 bits (486), Expect = 4e-118 Identities = 626/881 (71%), Gaps = 0/881 (0%) Strand=Plus/Minus Query 215399 TTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTA 215458 || || ||||| |||| || ||||| || || || | ||||| ||| |||| ||| || Sbjct 18437 TTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTA 18378 Query 215459 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTA 215518 | ||||| ||||| ||||| |||||||| || | |||| ||| || || || || Sbjct 18377 CTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTG 18318 Query 215519 CACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCT 215578 ||||| || ||||| |||||||| ||| | ||||| |||||| | || || || || ||| Sbjct 18317 CACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAACGGCGGTCCT 18258 Query 215579 TTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGG 215638 | |||| |||| | |||||| | ||||| | || ||| || | ||||| Sbjct 18257 TATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGG 18198 Query 215639 GAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTA 215698 |||||| || | || |||||| | |||||||| |||||| || || || ||||| Sbjct 18197 GAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 18138 Query 215699 TCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCT 215758 | || || ||| || ||| | | ||||| | |||||||| || || |||| | Sbjct 18137 GCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGT 18078 Query 215759 ATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAAC 215818 ||||| || ||||| || || || | ||| | ||| |||| || |||||| |||| || Sbjct 18077 ATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAGGCTAAGCATAAT 18018 Query 215819 ATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTC 215878 ||||| ||||| ||||| |||||||| | ||| |||||||| ||||| || || || ||| Sbjct 18017 ATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGCGGCTCCTTATTC 17958 Query 215879 TCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAA 215938 ||| ||||| ||||| | || || ||| | | ||||| || || || || | ||| Sbjct 17957 AGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 17898 Query 215939 TCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCA 215998 ||| || | ||||||| || || |||||||| ||||| || || || |||||||| Sbjct 17897 TCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCT 17838 Query 215999 CACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTT 216058 || ||||| ||||| || | ||||||||||| ||| ||||||||| || | | | Sbjct 17837 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTA 17778 Query 216059 CACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCA 216118 || |||||| | || || | ||||| | |||| ||| || || | ||| || Sbjct 17777 CATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGC 17718 Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||| | || |||||||| |||||||| || || || || ||| Sbjct 17717 ACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 17658 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| ||| ||||| || || ||||| |||| |||||||||||||||||| Sbjct 17657 CGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATG 17598 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGC 216279 || || ||||| ||||| || ||||| |||| | ||||| Sbjct 17597 CATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGC 17557 >seq29915 Length=314255 Score = 298 bits (330), Expect = 8e-76 Identities = 429/605 (71%), Gaps = 0/605 (0%) Strand=Plus/Plus Query 215480 TCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAA 215539 |||||||| || | |||| ||| || || || || ||||| || ||||| |||||| Sbjct 233364 TCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAA 233423 Query 215540 GCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCAC 215599 || ||| | |||| |||||| | || || || | |||| |||| || | | ||| Sbjct 233424 GCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACAC 233483 Query 215600 TTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGT 215659 ||| | ||||| | || ||| || | ||||||||||| || | || ||| Sbjct 233484 TTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGT 233543 Query 215660 ATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTC 215719 ||| | |||||||| |||||| || || || ||||| | || || ||| || ||| Sbjct 233544 ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTC 233603 Query 215720 CTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGA 215779 | | ||||| | |||||||| || || |||| |||||| || ||||| || || Sbjct 233604 TTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGT 233663 Query 215780 ACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCAC 215839 || ||||| | ||| |||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 233664 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 233723 Query 215840 ATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTT 215899 ||||||||||| |||||||| ||||| || || | ||| ||| ||||| ||||| | Sbjct 233724 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 233783 Query 215900 GTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAG 215959 || || ||| | | ||||| || || || || | |||||| || | ||||||| Sbjct 233784 GTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 233843 Query 215960 TTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTC 216019 || || |||||||| ||||| || || || |||||||| || ||||| ||||| || | Sbjct 233844 TTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 233903 Query 216020 ATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTC 216079 ||||||||||| ||| ||||||||| || | | | || |||||| | || || | Sbjct 233904 ATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGG 233963 Query 216080 CCTGT 216084 ||||| Sbjct 233964 CCTGT 233968 >seq32525 Length=219324 Score = 293 bits (324), Expect = 3e-74 Identities = 459/657 (70%), Gaps = 0/657 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || |||||| | ||| |||| ||||||||||| | ||||||||| | | | Sbjct 125584 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACC 125643 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || || || ||||| ||||| || ||||| || || || Sbjct 125644 GCAACTTCTGTATTTATTATCGCTTTTATTGCTGCCCCTCCAGTAGATATTGATGGTATT 125703 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| |||| ||| || | ||||| ||||| ||||| |||||||| || | Sbjct 125704 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATT 125763 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| || ||||| |||| ||| ||| | ||||| Sbjct 125764 CCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGGAGCGGCATCTGTTGAT 125823 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| || || |||| |||| || | | |||||| | ||||| | Sbjct 125824 GAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 125883 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | || |||||| | |||||||| Sbjct 125884 GCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATT 125943 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | || || ||| || || | | ||||| | Sbjct 125944 GCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTTTTGATCTATCCTATT 126003 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 |||||||| || || |||| |||||| || ||||| || | || ||||| | ||| Sbjct 126004 GGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGATACTTTCAATTTTATG 126063 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| || |||||| |||| || ||||| ||||| ||||| |||||||||||||| ||| Sbjct 126064 ATTGTATTTCAGGCTAAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCT 126123 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||| | ||||| | || || | | | | Sbjct 126124 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTATGGTTCCTTGGTAACTTTTAGTTTG 126183 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 ||||| || || || || | |||||| || | ||||||| || || |||||| Sbjct 126184 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAG 126240 >seq6217 Length=83728 Score = 129 bits (142), Expect = 9e-25 Identities = 189/268 (71%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 215710 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGG 215769 ||| || ||| | | ||||| | |||||||| || || |||| |||||| || || Sbjct 30545 TGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGG 30604 Query 215770 AATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCA 215829 ||| || | || ||||| | ||| |||| || |||||| |||| || ||||| ||||| Sbjct 30605 AATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCA 30664 Query 215830 CCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGC- 215888 ||||| |||||||||||||| |||||||| ||||| || || | ||| ||| |||| Sbjct 30665 TCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 30724 Query 215889 -----ACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCA 215943 | ||||| | || || | | | | ||||| || || || || | |||||| Sbjct 30725 TGGTTATGGTTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 30784 Query 215944 GAACTACGGTTACAAGTTCGGACAAGAG 215971 || | ||||||| || || |||||| Sbjct 30785 TAATGAAGGTTACAGATTTGGTCAAGAG 30812 >seq20192 Length=443579 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 215780 ACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCAC 215839 || ||||| | ||| |||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 96325 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 96266 Query 215840 ATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTT 215899 ||||||||||| |||||||| ||||| || || | ||| ||| ||||| ||||| | Sbjct 96265 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 96206 Query 215900 GTTACATCTTCTCTAATCAG 215919 || || ||| | | ||||| Sbjct 96205 GTAACTTCTAGTTTGATCAG 96186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744772670541600