Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq24624 495 4e-135 seq29915 372 4e-98 seq32525 322 6e-83 seq6217 129 7e-25 seq20192 86.0 7e-12 seq646 84.2 3e-11 >seq24624 Length=74067 Score = 495 bits (548), Expect = 4e-135 Identities = 634/874 (73%), Gaps = 0/874 (0%) Strand=Plus/Minus Query 169793 CTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCAT 169852 |||| || || || || | || || || ||||| || | || ||||| | || || Sbjct 18439 CTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTC 18380 Query 169853 TCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTC 169912 | | ||||| ||||| ||||| |||||||| || |||| |||| || || ||| Sbjct 18379 TACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTT 18320 Query 169913 TCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTC 169972 | ||||| ||||||||||||||||| ||| || | ||||| ||||| |||||||| |||| Sbjct 18319 TGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAACGGCGGTC 18260 Query 169973 CTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGT 170032 ||||| || || |||| | |||||| | | || | || ||||||||| | ||| Sbjct 18259 CTTATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGT 18200 Query 170033 GGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAG 170092 ||||||| | ||||| ||||||||||||||||| ||| |||||||| ||||| | Sbjct 18199 GGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTG 18140 Query 170093 TGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACG 170152 | |||| || ||||| ||||| | |||||| | ||||||||| || ||||| | Sbjct 18139 TTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATG 18080 Query 170153 GAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACA 170212 | ||||||||||| || |||||||| | || || ||| | ||||| || || |||| | Sbjct 18079 GTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAGGCTAAGCATA 18020 Query 170213 ACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCT 170272 | ||||||||||| ||||| || ||| | || |||||| | ||||| || | | | Sbjct 18019 ATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGCGGCTCCTTAT 17960 Query 170273 TCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACG 170332 || || ||||| ||||| | ||||| ||| | | ||||| || || ||||| || | Sbjct 17959 TCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATG 17900 Query 170333 AGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAG 170392 | || || | || |||| ||| || ||||| |||||||| || || ||||| || | Sbjct 17899 AATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTG 17840 Query 170393 CACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTC 170452 | ||||| || ||||| || | |||||||||||||| || || |||||| |||| | Sbjct 17839 CTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTT 17780 Query 170453 TTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTT 170512 | || |||||| | ||| | | ||||||||| | || ||||| || | | ||||| Sbjct 17779 TACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCA 17720 Query 170513 GCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTG 170572 |||| ||||| || ||| | ||||| || || |||||||| || | || ||| | | Sbjct 17719 GCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAG 17660 Query 170573 GTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAA 170632 || ||| || ||| ||||| || || ||||| |||| ||||| ||||||||||||| Sbjct 17659 GTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAA 17600 Query 170633 TGCATGAGCGTAATGCACACAACTTCCCACTTGA 170666 ||||||| |||||||| || || ||||| || || Sbjct 17599 TGCATGAACGTAATGCTCATAATTTCCCTCTAGA 17566 >seq29915 Length=314255 Score = 372 bits (412), Expect = 4e-98 Identities = 448/609 (74%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 |||||||| || |||| |||| || || ||| | ||||| ||||||||||||||| Sbjct 233364 TCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAA 233423 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995 || ||| || | ||||| ||||| |||||||| | ||||||| || || || | | ||| Sbjct 233424 GCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACAC 233483 Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055 ||| | | || | || ||||||||| | |||||||||| | ||||| ||| Sbjct 233484 TTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGT 233543 Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTC 170115 |||||||||||||| ||| |||||||| ||||| || |||| || ||||| ||| Sbjct 233544 ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTC 233603 Query 170116 TTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGT 170175 || | |||||| | ||||||||| || ||||| || ||||||||||| || |||||| Sbjct 233604 TTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGT 233663 Query 170176 ACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCAT 170235 || || || || ||| | ||||| || || ||||| || ||||||||||| ||||| || Sbjct 233664 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 233723 Query 170236 ATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTT 170295 ||| ||| || |||||| | ||||| || | || ||| || ||||| ||||| | Sbjct 233724 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 233783 Query 170296 GTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAA 170355 ||||| ||| | | ||||| || || ||||| || || || || | || |||| | Sbjct 233784 GTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 233843 Query 170356 TTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTT 170415 || || ||||| |||||||| || || ||||| || || ||||| || ||||| || | Sbjct 233844 TTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 233903 Query 170416 ATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTC 170475 |||||||||||||| || || |||||| |||| | | || |||||| | ||| | | Sbjct 233904 ATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGG 233963 Query 170476 CCTGTAGTA 170484 ||||||||| Sbjct 233964 CCTGTAGTA 233972 >seq32525 Length=219324 Score = 322 bits (356), Expect = 6e-83 Identities = 472/668 (71%), Gaps = 0/668 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | || || | || |||| ||||| ||||| |||||||| || Sbjct 125572 TGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCT 125631 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 | |||| | ||| | | ||||| | ||||| || || || || || || || Sbjct 125632 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTTATTGCTGCCCCTCCAGTAGAT 125691 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | || || | | ||||| ||||| ||||| ||| Sbjct 125692 ATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCT 125751 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| ||||||||||||| ||| Sbjct 125752 GGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGGAGCG 125811 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||| ||||| || ||||| ||||||||| || || || | | |||||| Sbjct 125812 GCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTC 125871 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | |||||||||| | ||||| |||||| Sbjct 125872 TTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATG 125931 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || |||| || ||||| || || Sbjct 125932 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTTTTG 125991 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | |||||| | ||||||||| || ||||| || ||||||||||| || |||| ||| Sbjct 125992 ATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGATACT 126051 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || || || ||| | ||||| || || |||| || ||||||||||| ||||| || ||| Sbjct 126052 TTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCATCCATTTCACATG 126111 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||| | ||||| | ||| Sbjct 126112 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTATGGTTCCTTGGTA 126171 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || | | | | ||||| || || ||||| || || || || | || |||| ||| Sbjct 126172 ACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTT 126231 Query 170359 GGACAAGA 170366 || ||||| Sbjct 126232 GGTCAAGA 126239 >seq6217 Length=83728 Score = 129 bits (142), Expect = 7e-25 Identities = 188/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 170107 GCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGT 170166 ||||| ||||| | |||||| | ||||||||| || ||||| || ||||||||||| Sbjct 30546 GCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGA 30605 Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 || |||| ||| || || || ||| | ||||| || || |||| || ||||||||||| Sbjct 30606 ATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCAT 30665 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGC-- 170284 ||||| || ||| ||| || |||||| | ||||| || | || ||| || |||| Sbjct 30666 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 30725 Query 170285 ----ACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAG 170340 | ||||| | ||||| | | | | ||||| || || ||||| || || || Sbjct 30726 GGTTATGGTTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCT 30785 Query 170341 AACTATGGATACAAATTCGGACAAGA 170366 || | || |||| ||| || ||||| Sbjct 30786 AATGAAGGTTACAGATTTGGTCAAGA 30811 >seq20192 Length=443579 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 170174 GTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCC 170233 |||| || || || ||| | ||||| || || ||||| || ||||||||||| ||||| | Sbjct 96327 GTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTC 96268 Query 170234 ATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCAC 170293 | ||| ||| || |||||| | ||||| || | || ||| || ||||| ||||| Sbjct 96267 ACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCT 96208 Query 170294 TTGTAACATCTTCTCTAATCAG 170315 | ||||| ||| | | ||||| Sbjct 96207 TGGTAACTTCTAGTTTGATCAG 96186 >seq646 Length=2337744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 169916 ACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTT 169975 |||| ||||||||||||||||| || || | ||||| ||||| || ||||| ||||||| Sbjct 1979624 ACTTTTATCCTATTTGGGAAGCGACATCTGTTGATGAATGGTTATACAACGGCGGTCCTT 1979683 Query 169976 ATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGG 170035 || || || || | | |||||| | | || | || ||||||||| | |||||| Sbjct 1979684 ATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGG 1979743 Query 170036 AACT 170039 |||| Sbjct 1979744 AACT 1979747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582606336648000