Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq24624 585 3e-162 seq29915 426 2e-114 seq32525 405 6e-108 seq6217 147 2e-30 seq20192 116 4e-21 seq646 91.5 2e-13 seq2755 82.4 9e-11 >seq24624 Length=74067 Score = 585 bits (648), Expect = 3e-162 Identities = 671/898 (75%), Gaps = 3/898 (0%) Strand=Plus/Plus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || ||||| | ||||| ||||| || |||||||| ||||| |||||||||||||| Sbjct 17560 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 17619 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 || || |||| | ||| ||||||||||| | ||||| ||| ||||| || | Sbjct 17620 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 17679 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| || || ||||| | || || ||||| ||||| | ||| | ||| | |||| Sbjct 17680 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 17739 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 ||||| || || || ||||||||||| ||||| || || | ||||||| ||||||||| Sbjct 17740 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 17799 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 ||||| |||||||| | || || || || || |||||||| ||||||||||| ||| Sbjct 17800 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 17859 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 || || |||||||| || ||||||| | || || |||||||||| ||||| | | Sbjct 17860 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 17919 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || | | |||||| || | ||||||||||| ||| ||||| | || ||||||||| Sbjct 17920 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCCGCCGAATACA 17979 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||| || ||||||||||||| ||||||||||| || ||||| | ||||| || ||| Sbjct 17980 CCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACA 18039 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | ||| | ||| | || ||||| || || || ||||| ||||| || || || || Sbjct 18040 ATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 18099 Query 84513 CCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 || | |||||| | | ||| ||||||| || |||||||| ||||| || || |||||| Sbjct 18100 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 18159 Query 84573 CAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCA 84632 ||||| ||||||||||| | |||| | ||||||||| ||||| ||||||| |||| Sbjct 18160 GCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGT-AGCA 18218 Query 84633 A-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCA 84691 | | |||||| | |||||| | | || |||| |||||| || || ||||||| ||| Sbjct 18219 AGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATATAACCA 18278 Query 84692 TTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGA 84751 ||| || | | ||| ||||||||||||||||| || || | ||| ||||| ||| | Sbjct 18279 TTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGT 18338 Query 84752 TGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTC 84811 |||| | ||||||||||||||| |||||||| || | ||||| |||| || ||||| Sbjct 18339 AGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTC 18398 Query 84812 ACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGAC 84868 ||| ||||| |||||||| ||| | || ||| ||| || | || || || |||||| Sbjct 18399 ACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATAATAAATACAGAC 18456 >seq29915 Length=314255 Score = 426 bits (472), Expect = 2e-114 Identities = 462/610 (76%), Gaps = 2/610 (0%) Strand=Plus/Minus Query 84162 ACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATAC 84221 || || ||||||||||| ||||| || || | ||||||| ||||||||| ||||| Sbjct 233971 ACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATAT 233912 Query 84222 TGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCT 84281 |||||||| | || || || || || |||||||| ||||||||||| ||||| || ||| Sbjct 233911 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCT 233852 Query 84282 TGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAA 84341 ||||| || ||||||| | || || |||||||||| ||||| | ||| | | | Sbjct 233851 TGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 233792 Query 84342 GAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACT 84401 ||||| || | ||||||||||| ||| |||||| | || |||||||||||||| || Sbjct 233791 GAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACA 233732 Query 84402 CCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAG 84461 || ||||||||||| ||||||||||| || ||||| || ||||| || |||| ||| | Sbjct 233731 CCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAA 233672 Query 84462 TTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGA 84521 ||||| || ||||| || || || ||||| ||||| || || || || || | |||| Sbjct 233671 TTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGA 233612 Query 84522 TACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCAT 84581 || | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| Sbjct 233611 TAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 233552 Query 84582 GGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA-TGCACC 84640 ||||||||||| | |||| | ||||||||| ||||| |||||||| |||| | |||| Sbjct 233551 GGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTA-GCAAGCTACACC 233493 Query 84641 AATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCAT 84700 || | |||||| | |||| |||| |||||| | || ||||||| |||||| || || Sbjct 233492 AAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAAT 233433 Query 84701 ACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTAC 84760 | ||| ||||||||||||||||| || || | ||| ||||| ||| | |||| | Sbjct 233432 AGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAAT 233373 Query 84761 GGCACCAGAA 84770 |||||||||| Sbjct 233372 GGCACCAGAA 233363 >seq32525 Length=219324 Score = 405 bits (448), Expect = 6e-108 Identities = 501/680 (74%), Gaps = 4/680 (1%) Strand=Plus/Minus Query 84279 TCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGA 84338 |||||||| || ||||||| | || || |||||||||| ||||| | ||| | | Sbjct 126239 TCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 126180 Query 84339 GAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCA 84398 | |||| || | ||||||| ||| ||| |||||| | || |||||||||||||| Sbjct 126179 CTAAAAGTTACCAAGGAACCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCT 126120 Query 84399 ACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATG 84458 || || ||||||||||| ||||||||||| || ||||| | ||||| || |||| ||| Sbjct 126119 ACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATA 126060 Query 84459 TAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAA 84518 | ||||| || |||| || || || ||||| ||||| || || || || || | | Sbjct 126059 AAATTGAAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATA 126000 Query 84519 GGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATC 84578 ||||| | | || ||||||| || |||||||| ||||| || || |||||| ||| Sbjct 125999 GGATAGATCAAAAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATC 125940 Query 84579 CATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA-TGC 84637 || ||||||||||| | |||| | ||||||||| ||||| |||||||| |||| | | Sbjct 125939 CAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTA-GCAAGCTAC 125881 Query 84638 ACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTC 84697 ||||| | |||||| | |||| |||| |||||| || || || |||| |||||| || Sbjct 125880 ACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATC 125821 Query 84698 CATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAAC 84757 | | ||| ||| ||||||||||||| || || | ||| ||||| ||| | |||| Sbjct 125820 AACAGATGCCGCTCCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAAT 125761 Query 84758 TACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGAT 84817 | ||||||||||||||| |||||||| || | ||||| |||| || |||||||| || Sbjct 125760 AATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAAT 125701 Query 84818 ACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAG 84876 ||| |||||||| ||||| || ||| ||| || || || || || ||||| ||| || | Sbjct 125700 ACCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACAGA-AGTTGCGG 125642 Query 84877 CAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGG 84936 | || ||| |||||||| | | |||||||| |||| || | ||| || | ||| Sbjct 125641 TCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTGC 125582 Query 84937 AGGTGACCCAATCACAGAAG 84956 ||| | ||| | ||||||| Sbjct 125581 TGGTTATCCAGTTACAGAAG 125562 >seq6217 Length=83728 Score = 147 bits (162), Expect = 2e-30 Identities = 193/268 (72%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 84279 TCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGA 84338 |||||||| || ||||||| | || || |||||||||| ||||| | ||| | | Sbjct 30811 TCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 30752 Query 84339 GAAGAAGTGACAAGTGAACCAT------GCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 | |||| || | ||||||| |||| ||| |||||| | || ||||||||| Sbjct 30751 CTAAAAGTTACCAAGGAACCATAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 30692 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||| || || ||||||||||| ||||||||||| || ||||| | ||||| || ||| Sbjct 30691 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACA 30632 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | ||| | ||||| || |||| || || || ||||| ||||| || || || || Sbjct 30631 ATCATAAAATTGAAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 30572 Query 84513 CCGAAAGGATACACAAGGAATACAGCAG 84540 || | |||||| | | ||| ||||||| Sbjct 30571 CCAATAGGATAGATCAAGAAAACAGCAG 30544 >seq20192 Length=443579 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 84341 AGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAAC 84400 |||||| || | ||||||||||| ||| |||||| | || |||||||||||||| || Sbjct 96197 AGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTAC 96256 Query 84401 TCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTA 84460 || ||||||||||| ||||||||||| || ||||| || ||||| || |||| ||| | Sbjct 96257 ACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAA 96316 Query 84461 GTTGAACGT 84469 ||||| || Sbjct 96317 ATTGAAAGT 96325 >seq646 Length=2337744 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 84605 AAGTTCCCATTCACGACCCATGTAAGCAAA-TGCACCAATCAGGAAGTGAAAGACAACAA 84663 ||||||||| ||||| |||||||| |||| | |||||| | |||||| | |||| | Sbjct 1979748 AAGTTCCCACTCACGCCCCATGTA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 1979690 Query 84664 GTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGAT 84723 ||| |||||| || || || |||| |||||| || | | || |||||||||||||||| Sbjct 1979689 GTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGTCGCTTCCCAAATAGGAT 1979630 Query 84724 AGAAATGTAGACCAATA 84740 | || | | ||| ||| Sbjct 1979629 AAAAGTCCAAACCTATA 1979613 >seq2755 Length=5062 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 149447 TTGCGGGATAGAGCAGTCTGGTAGCTCATCAGTCTCATAAGCTGAAGATCGGTGGTTCAA 149506 ||||||| | ||||||||||||||||| || | ||||||| | |||| ||| |||||||| Sbjct 324 TTGCGGGGTGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCAA 265 Query 149507 ATCCACCTCCCGC 149519 ||||| | ||||| Sbjct 264 ATCCAGCCCCCGC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571036735683600