Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq30896 93.3 5e-14 seq26036 87.8 2e-12 seq27061 86.0 7e-12 seq10089 86.0 7e-12 >seq30896 Length=1964275 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| |||||||||||||| || ||||| |||||| || | ||||| || ||||| || Sbjct 1739169 ACAAGCAAAATCACAATGAAGGCCCTCATCTCTAGAGATTAGCTCATTTGAGAATGTCAA 1739110 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 ||| ||||||| |||||| ||||| | ||||||||| Sbjct 1739109 ACCTGGCATCAATCCTCTCTTTTTAAGCCAGAATAT 1739074 >seq26036 Length=1795852 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || || ||||| | ||| | |||||||| || | || | ||||| || ||||| ||| Sbjct 175823 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGGAACAATGCCA 175882 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||||||||| || |||| | || | | ||| || Sbjct 175883 TTGGATGTCCCATTTGTCCCACGAATATAACTACCTGTAGCACGAATGTCATGAATAGAG 175942 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | || ||||| || Sbjct 175943 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATATC 176002 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || ||||||||||||||| |||| Sbjct 176003 CCCTCTATACTATCATCTTTCAT 176025 >seq27061 Length=934220 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || || ||||| | ||| | |||||||| || | || | |||||||| ||||| ||| Sbjct 848517 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCCA 848576 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||||||||| || |||| | || | | ||| || Sbjct 848577 TTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGAG 848636 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | || || || || Sbjct 848637 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATATC 848696 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || ||||||||||||||| ||||| | || || |||||| Sbjct 848697 CCCTCTATACTATCATCTTTCATACACACAAGGAAGCAACTA 848738 >seq10089 Length=680993 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||| ||| || | |||||||||||||||| | |||||| ||| || | || | Sbjct 148585 GTTCCTGCATTGAAAAGTGTTGGAGATGCATGAGTGAACCATCTCTGAGACATCATGTGG 148644 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||| | | ||||||| || || | ||| || || | || || | ||| ||| Sbjct 148645 TATGTTCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATCAAC 148704 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 || | ||||| ||||| |||| || | | ||||| || ||||| | || | Sbjct 148705 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTATGACCTCTCAAGA 148764 Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| |||||||| || | || |||||| |||||| Sbjct 148765 GTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCAT 148804 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| ||| | || | | |||||| ||||||||| Sbjct 148212 CCCCCTTGATCAACATAGCGAGCAGTATCGTTGAACACACGCAGCATTGGAACAATACCA 148271 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || || |||||||| | || | || || || | Sbjct 148272 TTTGATGTCCCATTTGTGCCACGGATGTAACTTCCTGTGGCACGAATGTTGTGAACACTA 148331 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | |||||| || | || ||||| ||| Sbjct 148332 ACACCAATTCCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAAAGTGTCATATATT 148391 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || ||||||||||||||| |||| Sbjct 148392 CCCTCTATACTATCATCTTTCAT 148414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561875735638800