Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq24624 509 5e-140 seq32525 356 7e-94 seq29915 354 2e-93 seq6217 159 1e-34 seq20192 105 2e-18 >seq24624 Length=74067 Score = 509 bits (564), Expect = 5e-140 Identities = 652/897 (73%), Gaps = 6/897 (1%) Strand=Plus/Plus Query 35970 GCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 36029 || ||||| || || ||||| || || || ||||| |||||||| |||||||| || | | Sbjct 17557 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGG 17616 Query 36030 TCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACT 36089 | || ||||||| ||| |||||||| || | || | || | |||||| || Sbjct 17617 TTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACG 17676 Query 36090 GACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTA 36149 || || ||||| || || || || | || |||||||||||| || || | ||||||| Sbjct 17677 GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTA 17736 Query 36150 AGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTA 36209 | ||| || | || ||||||||||| | ||||||||||||| || ||| || Sbjct 17737 AACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTG 17796 Query 36210 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 36269 || || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 17797 AAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAG 17856 Query 36270 GTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCA 36329 || ||||| ||||| || ||| | || || | || ||||||| | || ||||| Sbjct 17857 GTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 17916 Query 36330 CGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 36389 | || | ||||| || | || ||||||||| |||||| | || |||||| Sbjct 17917 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCCGCCGAAT 17976 Query 36390 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 36449 || || || ||| | | ||| || || ||||||||||| ||||| || | |||||||| Sbjct 17977 ACACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAAT 18036 Query 36450 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 36509 |||| |||||||||| |||| |||||||| || |||||||||||||| || || || || Sbjct 18037 ACAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCC 18096 Query 36510 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 36569 || |||| ||| |||| ||||| |||||| || ||||||||||| |||||||| || Sbjct 18097 TGACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCA 18156 Query 36570 ACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AG 36626 ||| ||||| || | |||||| | | | ||||||||||||| | || |||| || Sbjct 18157 ACAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAG 18216 Query 36627 TAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 36686 ||||| | ||||| | ||||| | | ||| |||| ||| || || ||||||||| Sbjct 18217 CAAGCT---ACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATAT 18273 Query 36687 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTC 36746 ||||| || || | | ||| |||||||| || || || ||||| | ||| || || Sbjct 18274 AACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCA 18333 Query 36747 GATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 36806 || | || | || || ||||| ||||| ||||||||||| |||| | ||| || ||| Sbjct 18334 GAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 18393 Query 36807 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 ||||||||||||||||| ||||| || |||| ||||||| ||| | || | |||| Sbjct 18394 GGCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATAATAAAT 18450 >seq32525 Length=219324 Score = 356 bits (394), Expect = 7e-94 Identities = 438/597 (73%), Gaps = 6/597 (1%) Strand=Plus/Minus Query 36362 CATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATG 36421 ||||||| ||||| | || |||||||| || || ||||| | ||| || || ||||| Sbjct 126156 CATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATG 126097 Query 36422 CATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACC 36481 |||||| ||||| || | |||||||| |||| ||||||||||||||| ||||||| || Sbjct 126096 CATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAAATTCC 126037 Query 36482 AAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAA 36541 |||||||||||||| || || || || || |||| ||| |||| || || |||||| Sbjct 126036 TAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAAAAAACAGCAGT 125977 Query 36542 TGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATA 36601 || ||||||||||| |||||||| || ||| ||||| || | |||||| | | | | Sbjct 125976 AGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGAAA 125917 Query 36602 ACTAAGTTCCCATTGTCGTCCCAAGTA---AGCTGAGATACCAATGAGAAAGTGGAACAC 36658 |||||||||||| | || |||| ||| |||| | ||||| | ||||| | || Sbjct 125916 ACTAAGTTCCCACTCACGCCCCATGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAAC 125860 Query 36659 AATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGAT 36718 ||| |||| ||| || || ||||| |||||||| || || | | ||| ||| |||| || Sbjct 125859 AATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTCCCCAAAT 125800 Query 36719 TGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTT 36778 || || ||||| | ||| || || || | || | || || ||||| ||||| || Sbjct 125799 AGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATGATATT 125740 Query 36779 GTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 36838 ||||||||| |||| | ||| || |||||||||||||||||||| ||||| || ||||| Sbjct 125739 GTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGG 125680 Query 36839 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 36898 ||||||| ||| || || | |||| | | ||| || || | | ||| ||||| | Sbjct 125679 GGCAGCAATAAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGAATCATCAA 125620 Query 36899 TACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || |||||||| || | || || || || | || || || | ||||| ||| || Sbjct 125619 AACACCAAACCATCCAATGTAAAGACGATTTTCGGTGCTGGTTATCCAGTTACAGAA 125563 >seq29915 Length=314255 Score = 354 bits (392), Expect = 2e-93 Identities = 428/581 (74%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 36165 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGG 36224 || ||||||||||| | ||||||||||||| || ||| || || || ||||| ||| Sbjct 233968 ACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATATTGG 233909 Query 36225 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 36284 ||||| | || ||||| || |||||||| || ||||| ||||| || ||||| ||||| Sbjct 233908 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGA 233849 Query 36285 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 36344 || ||| | || || | || ||||||| | || ||||| | || | ||| Sbjct 233848 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 233789 Query 36345 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 36404 || || | || ||||||||| ||||| | || |||||||| || || ||||| Sbjct 233788 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 233729 Query 36405 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 36464 | ||| || || ||||||||||| ||||| || || |||||||| |||| |||||||||| Sbjct 233728 AACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTG 233669 Query 36465 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 36524 ||||| |||||||| || |||||||||||||| || || || || || |||| ||| ||| Sbjct 233668 AAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAG 233609 Query 36525 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 36584 | ||||| |||||| || ||||||||||| |||||||| || ||| ||||| || Sbjct 233608 ATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 233549 Query 36585 CTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA---AGCTGAGATACCA 36641 | |||||| | | | ||||||||||||| | || |||| ||| |||| | |||| Sbjct 233548 CGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCT---ACACCA 233492 Query 36642 ATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGG 36701 | | ||||| | ||||| |||| ||| || | |||||||||||||| || || | Sbjct 233491 AGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAATA 233432 Query 36702 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 36742 | ||| |||||||| || || || ||||| | ||| || || Sbjct 233431 GATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 233391 >seq6217 Length=83728 Score = 159 bits (176), Expect = 1e-34 Identities = 145/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 30727 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 30668 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 ||||||||||| ||||| || | |||||||| |||| ||||||||||||||| ||||| Sbjct 30667 GGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAA 30608 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || |||||||||||||| || || || || || |||| ||| |||| ||||| ||| Sbjct 30607 ATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAACA 30548 Query 36537 GCA 36539 ||| Sbjct 30547 GCA 30545 >seq20192 Length=443579 Score = 105 bits (116), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 96213 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 96272 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGT 36469 ||||||||||| ||||| || || |||||||| |||| ||||||||||||||| Sbjct 96273 GGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGT 96325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150395136952180