Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq24624 471 1e-128 seq32525 343 4e-90 seq29915 315 2e-81 seq6217 134 4e-27 seq20192 104 7e-18 >seq24624 Length=74067 Score = 471 bits (522), Expect = 1e-128 Identities = 648/901 (72%), Gaps = 6/901 (1%) Strand=Plus/Plus Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251 || |||||||| || ||||| || |||||||| ||||| ||||||||||||||||||||| Sbjct 17557 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGG 17616 Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACT 5311 || || ||||| | | ||| ||||| || || | | ||| | ||||| || Sbjct 17617 TTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACG 17676 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || ||||| || || || || | || |||||||||||| ||| || | || |||| Sbjct 17677 GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTA 17736 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||| | ||||||||||||| ||| |||||| Sbjct 17737 AACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTG 17796 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 17797 AAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAG 17856 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 |||||||||||||| || ||| | || || | || ||| | | || ||||| Sbjct 17857 GTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 17916 Query 5552 CGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAAT 5611 | || | |||||| || | |||||||||||| ||| || | || |||||| Sbjct 17917 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCCGCCGAAT 17976 Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| ||| | | |||||| || ||||||||||| ||||| || | ||||| ||| Sbjct 17977 ACACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAAT 18036 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA--CTTC 5729 || | |||||| || ||||||| || || || ||||||||||||| |||||| |||| Sbjct 18037 ACAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCAT--CTGAAAAGCTTC 18094 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATAT 5788 |||| || | ||| || | || || || | |||| || || ||||| || ||||||||| Sbjct 18095 CCTGACCAATAGGATAGATCAAGAAAACAGCAGTA-GCGGCTGCAACAGGAGCTGAATAT 18153 Query 5789 GCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAG 5848 || || |||||| || ||||| || || | ||||||||||||| | || |||| | Sbjct 18154 GCAACAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATG 18213 Query 5849 TAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAA 5908 || || | ||||| | |||||| | | | |||| || || || || || || Sbjct 18214 TAGCAAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATAT 18273 Query 5909 AGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTG 5968 | ||||||||| | | || |||||||| || ||||| ||||| || || || || Sbjct 18274 AACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCA 18333 Query 5969 GAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACG 6028 || | || | || ||| || || ||||| ||||||||||| ||||||||||| | || Sbjct 18334 GAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 18393 Query 6029 GGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCA 6088 || ||||| || || || || || ||| | || ||||| | || | | |||||| || Sbjct 18394 GGCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATAATAAATACA 18453 Query 6089 G 6089 | Sbjct 18454 G 18454 >seq32525 Length=219324 Score = 343 bits (380), Expect = 4e-90 Identities = 440/602 (73%), Gaps = 6/602 (1%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||| ||||||| ||| | | || |||||||| ||||| ||||| | |||||| || Sbjct 126161 CCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 126102 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 ||||||||||| ||||| || | ||||| ||||| | |||||| || |||||| | || Sbjct 126101 GGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAA 126042 Query 5699 ATACCAAGAGGCATACCATCACTGAAA--CTTCCCTGTCCGAAAGGGTATACTAAAAATA 5756 || || |||||||||||||| ||||| |||||||| || | ||| || | ||||| | Sbjct 126041 ATTCCTAGAGGCATACCATC--TGAAAAGCTTCCCTGACCAATAGGATAGATCAAAAAAA 125984 Query 5757 CTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCT 5815 | | ||||| | || ||||| || ||||||||||| || |||||| || ||||| || Sbjct 125983 CAGCAGTAG-CGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 125925 Query 5816 AATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGG 5875 || | ||||||||||||| | || |||| ||| || | ||||| | |||||| Sbjct 125924 AAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACACCAAGTAAGAAGTGT 125865 Query 5876 AAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCC 5935 | || | |||| || || || || ||||| | ||||||||| | | || ||| || Sbjct 125864 AGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTCCC 125805 Query 5936 CAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATG 5995 || || ||||| ||||| || || || || || | || | || ||| || || ||| Sbjct 125804 CAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATG 125745 Query 5996 ATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACT 6055 || ||||||||||| ||||||||||| | || || ||||| || || || || || ||| Sbjct 125744 ATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCTACT 125685 Query 6056 GGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATC 6115 || || ||||| | || || | |||||| ||| ||||||||| || | | || ||| Sbjct 125684 GGAGGGGCAGCAATAAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGAATC 125625 Query 6116 ATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAG 6175 || || ||||||||||| || | || || || || | |||||| || | ||||| |||| Sbjct 125624 ATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTGCTGGTTATCCAGTTACAG 125565 Query 6176 AA 6177 || Sbjct 125564 AA 125563 >seq29915 Length=314255 Score = 315 bits (348), Expect = 2e-81 Identities = 423/584 (72%), Gaps = 6/584 (1%) Strand=Plus/Minus Query 5384 ACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATAC 5443 || || ||||||| ||| | ||||||||||||| ||| |||||| || || ||||| Sbjct 233971 ACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATAT 233912 Query 5444 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCT 5503 |||||||| | || ||||| || |||||||| || ||||| ||||| |||||||||||| Sbjct 233911 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCT 233852 Query 5504 TGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAA 5563 || || ||| | || || | || ||| | | || ||||| | || | | Sbjct 233851 TGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 233792 Query 5564 GAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACA 5623 ||||| || | |||||||||||| ||| | | || |||||||| ||||| ||| Sbjct 233791 GAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACA 233732 Query 5624 CCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAG 5683 || | |||||| || ||||||||||| ||||| || || ||||| ||||| | |||||| Sbjct 233731 CCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAA 233672 Query 5684 TTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA--CTTCCCTGTCCGAAAG 5741 || |||||||| || || || |||||||||||||| ||||| |||||||| || | || Sbjct 233671 TTGAAAGTACCTGAAATTCCTAGAGGCATACCATC--TGAAAAGCTTCCCTGACCAATAG 233614 Query 5742 GGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATC 5800 | || | || || || | ||||| | || ||||| || ||||||||||| || |||| Sbjct 233613 GATAGATCAAGAAAACAGCAGTAG-CGGCTGCAACAGGAGCTGAATATGCAACAGCAATC 233555 Query 5801 CATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATA 5860 || || ||||| || || | ||||||||||||| | || |||| ||| || | | Sbjct 233554 CAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACA 233495 Query 5861 CCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCG 5920 |||| | |||||| | || | |||| || || | || || || | ||||||||| Sbjct 233494 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCA 233435 Query 5921 AGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC 5964 | | || |||||||| || ||||| ||||| || || || || Sbjct 233434 ATAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 233391 >seq6217 Length=83728 Score = 134 bits (148), Expect = 4e-27 Identities = 145/189 (77%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | | || |||||||| ||||| ||||| | |||||| || Sbjct 30727 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 30668 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 ||||||||||| ||||| || | ||||| ||||| | |||||| || |||||| | || Sbjct 30667 GGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAA 30608 Query 5699 ATACCAAGAGGCATACCATCACTGAAA--CTTCCCTGTCCGAAAGGGTATACTAAAAATA 5756 || || ||||||||||||| |||||| |||||||| || | ||| || | || || | Sbjct 30607 ATTCCTAGAGGCATACCAT--CTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAA 30550 Query 5757 CTG-AGTAG 5764 | | ||||| Sbjct 30549 CAGCAGTAG 30541 >seq20192 Length=443579 Score = 104 bits (114), Expect = 7e-18 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | | || |||||||| ||||| ||||| | |||||| || Sbjct 96213 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 96272 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTAC 5693 ||||||||||| ||||| || || ||||| ||||| | |||||| || ||||||| Sbjct 96273 GGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTAC 96327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152589472276620