Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq24624 495 1e-135 seq29915 342 2e-89 seq32525 338 2e-88 seq6217 159 1e-34 seq20192 105 2e-18 >seq24624 Length=74067 Score = 495 bits (548), Expect = 1e-135 Identities = 647/894 (72%), Gaps = 6/894 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| || |||||||| || || || ||||| |||||||| |||||||| || | || Sbjct 17560 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 17619 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 || ||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 17620 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 17679 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || |||||||||||| || || | |||||||| | Sbjct 17680 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 17739 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | ||||||||||||| ||| ||| || || Sbjct 17740 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 17799 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 17800 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 17859 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || ||||||| | || ||||| | Sbjct 17860 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 17919 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| |||||| | || |||||||| Sbjct 17920 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCCGCCGAATACA 17979 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||| | | ||| || || ||||||||||| ||||| || | |||||||| ||| Sbjct 17980 CCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACA 18039 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | |||||||||| |||| |||||||| || |||||||||||||| || || || || || Sbjct 18040 ATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 18099 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 |||| ||| |||| ||||| |||||| || ||||||||||| |||||||| || ||| Sbjct 18100 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 18159 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAA 26109 ||||| || | ||| || | | | ||||||||||||| | || |||| || || Sbjct 18160 GCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAA 18219 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 ||| | || | | ||||| | | ||| |||| ||| || || |||||||| ||| Sbjct 18220 GCT---ACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATATAAC 18276 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 || || || | | ||| |||||||| || || || ||||| | ||| || || ||| Sbjct 18277 CATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAA 18336 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || || ||||| ||||||||||| |||| | ||| || |||||| Sbjct 18337 GTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 18396 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 26343 |||||||||||||| ||||| || |||| ||||||| ||| | || | |||| Sbjct 18397 TCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATAATAAAT 18450 >seq29915 Length=314255 Score = 342 bits (378), Expect = 2e-89 Identities = 425/581 (73%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704 || ||||||||||| | ||||||||||||| ||| ||| || || || ||||| ||| Sbjct 233968 ACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATATTGG 233909 Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764 ||||| | || ||||| || |||||||| || ||||| ||||| || ||||| ||||| Sbjct 233908 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGA 233849 Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 25824 || ||| | || || | || ||||||| | || ||||| | || | ||| Sbjct 233848 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 233789 Query 25825 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 25884 || || | || ||||||||| ||||| | || |||||||| || || ||||| Sbjct 233788 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 233729 Query 25885 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 25944 | ||| || || ||||||||||| ||||| || || |||||||| |||| |||||||||| Sbjct 233728 AACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTG 233669 Query 25945 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 26004 ||||| |||||||| || |||||||||||||| || || || || || |||| ||| ||| Sbjct 233668 AAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAG 233609 Query 26005 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 26064 | ||||| |||||| || ||||||||||| |||||||| || ||| ||||| || Sbjct 233608 ATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 233549 Query 26065 CTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATGCCG 26121 | ||| || | | | ||||||||||||| | || |||| || ||||| | || Sbjct 233548 CGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCT---ACACCA 233492 Query 26122 ATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGG 26181 | | ||||| | ||||| |||| ||| || | |||||||| ||||| || || | Sbjct 233491 AGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAATA 233432 Query 26182 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 26222 | ||| |||||||| || || || ||||| | ||| || || Sbjct 233431 GATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 233391 >seq32525 Length=219324 Score = 338 bits (374), Expect = 2e-88 Identities = 434/597 (73%), Gaps = 6/597 (1%) Strand=Plus/Minus Query 25842 CATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATG 25901 ||||||| ||||| | || |||||||| || || ||||| | ||| || || ||||| Sbjct 126156 CATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATG 126097 Query 25902 CATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACC 25961 |||||| ||||| || | |||||||| |||| ||||||||||||||| ||||||| || Sbjct 126096 CATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAAATTCC 126037 Query 25962 AAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAA 26021 |||||||||||||| || || || || || |||| ||| |||| || || |||||| Sbjct 126036 TAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAAAAAACAGCAGT 125977 Query 26022 TGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATA 26081 || ||||||||||| |||||||| || ||| ||||| || | ||| || | | | | Sbjct 125976 AGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGAAA 125917 Query 26082 ACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATGCCGATGAGAAAGTGGAACAC 26138 |||||||||||| | || |||| || ||||| | || | | ||||| | || Sbjct 125916 ACTAAGTTCCCACTCACGCCCCATGTAGCAAGCT---ACACCAAGTAAGAAGTGTAGAAC 125860 Query 26139 AATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGAT 26198 ||| |||| ||| || || ||||| || ||||| || || | | ||| ||| |||| || Sbjct 125859 AATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTCCCCAAAT 125800 Query 26199 TGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTT 26258 || || ||||| | ||| || || ||| | || | || || || || ||||| || Sbjct 125799 AGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATGATATT 125740 Query 26259 GTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 26318 ||||||||| |||| | ||| || |||||||||||||||||||| ||||| || ||||| Sbjct 125739 GTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGG 125680 Query 26319 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 26378 ||||||| ||| || || | |||| | | ||| || || | | ||| ||||| | Sbjct 125679 GGCAGCAATAAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGAATCATCAA 125620 Query 26379 TACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || |||||||| || | || || || || | || || || | ||||| ||| || Sbjct 125619 AACACCAAACCATCCAATGTAAAGACGATTTTCGGTGCTGGTTATCCAGTTACAGAA 125563 >seq6217 Length=83728 Score = 159 bits (176), Expect = 1e-34 Identities = 145/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 30727 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 30668 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 ||||||||||| ||||| || | |||||||| |||| ||||||||||||||| ||||| Sbjct 30667 GGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAA 30608 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || |||||||||||||| || || || || || |||| ||| |||| ||||| ||| Sbjct 30607 ATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAACA 30548 Query 26017 GCA 26019 ||| Sbjct 30547 GCA 30545 >seq20192 Length=443579 Score = 105 bits (116), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 96213 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 96272 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGT 25949 ||||||||||| ||||| || || |||||||| |||| ||||||||||||||| Sbjct 96273 GGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGT 96325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151933730670920