Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq9007 154 1e-32 seq15063 141 6e-29 seq9261 87.8 1e-12 >seq9007 Length=2901 Score = 154 bits (170), Expect = 1e-32 Identities = 668/1037 (64%), Gaps = 42/1037 (4%) Strand=Plus/Minus Query 71746 CAAGAGCGAGCAGGTACAGGTCGTATCTATCTTCAAAACGTAGATCACTGTAATACCAAT 71805 |||||||| || | ||||||||||||||| | |||||||| || || || || ||| | Sbjct 2815 CAAGAGCGTGCCAGCACAGGTCGTATCTATGTGCAAAACGTTGACCATTGCAACACCCAC 2756 Query 71806 AGCCCATTTATTGCAGAAGTTGCCCCTATTCGTATGAGTAACTTATGCCTTGAAATTGCA 71865 || || ||| || || || || ||||| ||| |||| | ||||| || Sbjct 2755 AGTCCGTTTGACCCAAGTGTCGCGCCAATTCGCCAATCCAACCTATGTATGGAAATCGCG 2696 Query 71866 TTACCAACTGAACCTATGCAGGATATTAATAAGCCTGAA---GGTGAAATTGCATTATGT 71922 |||| || |||| | | | || ||| | |||| |||||||| || | ||| Sbjct 2695 CTACCGACCCAACCGCTTGACAACATCAATGA---TGAAAGCGGTGAAATCGCCCTTTGT 2639 Query 71923 ACATTAGCTG-CATTCAATCTTGGTGCCATTAAAGATTTAGGT-CGT--ATGGAAAAATT 71978 || ||| | | |||| | | | |||| || || | |||| | | || || | Sbjct 2638 ACGTTATCAGGCATTAACT-TGGGTGAAATCAACCAATTAGAAACATCCATCAAAGAGCC 2580 Query 71979 ATCCGAATTAGTTATTAGAGCATTAGATGCTTTACTTGATTACCAAGATTATCCAATACT 72038 | | ||| | | | | || ||||||| || ||||| |||||||| || || | | Sbjct 2579 AGCGGAACTGATCGTGCGTGCGCTAGATGCCTTGCTTGACTACCAAGACTACCCTGTCAT 2520 Query 72039 AGCTGCTGAAAATGCTACCAAGCGAAGACGTACTTTAGGTGTTGGCATTATTAATTATGC 72098 |||||| |||||| | | | | | || || || ||| |||| | || || || || Sbjct 2519 CGCTGCTAAAAATGGCTCTATGAAACGCCGCACGTTGGGTATTGGTGTCATCAACTACGC 2460 Query 72099 TCATCACTTAGCTAAAAATGGTGTTAAATATTCTGATGGCAGTGCCAACAATTTAACTCA 72158 || | | || ||||||||| |||||||| ||| | || | |||||| || Sbjct 2459 CTATTATCTTGCCAAAAATGGTACCAAATATTCAGATCCTACGGCGCTCGGTTTAACCCA 2400 Query 72159 T-GAACTCTTCGAA-------AGTTTT--CAGTATTACCTATTGAAAGCAAGTTGTGATT 72208 | | ||| || ||| ||| || |||||||| || ||| || | | Sbjct 2399 TCGCACTTTT-GAAGCCTTACAGTATTTACAGTATTATCTGTTGGTGGCGTCCAATAAAC 2341 Query 72209 TAGCCAAAGAACAAGGCGCTTGTCCTGCATTCCATGAGACAACTTATTCACAGGGTATAT 72268 | || ||||| |||||||| ||||||||||| || || || |||||||| ||||| | Sbjct 2340 TGGCTAAAGAGCAAGGCGCGTGTCCTGCATTTGGCGATACCACGTATTCACAAGGTATTT 2281 Query 72269 TACCTATTGACCGCTATAATAAGTCAG---TAGATGGTATTCATAGTGAAGAGTTACATC 72325 |||| ||||| ||||| || ||| | || | ||| || ||| | |||| | Sbjct 2280 TACCGATTGATACGTATAA--AG-CAGATATTGACGCGATTTGTAATGAGCCGCTACAAC 2224 Query 72326 TTCCGTGGGAGCAATTGAGAGAAGATATTTTGAAATACGGTTTACGTAATTCTACTGTAT 72385 | ||||| | || | ||||||| | ||||| | || || || || | Sbjct 2223 TCGACTGGGAAGCACTGCGTCAAGATATCAAAACCCACGGTCTTCGCAACTCAACCTTGA 2164 Query 72386 CCTCATTGATGCCAAGTGAAACAAGTTCTCAGGTATCTAATGCAACAAATGGTATTGAAC 72445 || | ||||||||| ||||| | || | |||| ||||| ||||| ||||| | Sbjct 2163 CCGCCTTGATGCCATCAGAAACCTCTAGCCAAATTGCTAACGCAACTAATGGCATTGAGC 2104 Query 72446 CACCTCGCGGTTTAATGAGCATTAAAGCAAGTAAAGATGGTATCTTGAAGCAAGTAGTAC 72505 ||||||| ||| | | | ||||| ||||| ||||| || || ||||| || | Sbjct 2103 CACCTCGTGGTCTGGTATCTGTGAAAGCGTCAAAAGACGGTATTTTAAAACAAGTGGTGC 2044 Query 72506 CTCATATTGGTA----CAATGGCTAATGACTATGAATTGTTGTGGAATATTCCAAGCAAT 72561 || | |||| || ||| | || | || || | || ||| | || |||| || Sbjct 2043 CTGAGATTGATAAGCTCAAAG----ATCAATACGAGCTATTATGGCAAATGCCAAATAAC 1988 Query 72562 AATGGCTATATTGAAT-TAGTTGCAATCATGCAAAAGTTTGTCGATCAGGCAATCTCTGC 72620 || || ||| |||| | | || ||||| |||||||| || | || || ||||| | Sbjct 1987 AAAGGTTAT-TTGAGTCTTGTGGCAATTATGCAAAAATTCATTGACCAAAGTATCTCAAC 1929 Query 72621 GAACACAAATTATGACCCTACTAAATTCGCAAATGGCAAAGTCCCAGTTAAGCAAATTCT 72680 || || || || ||||| || || || | | || || || || | ||| || | Sbjct 1928 CAATACCAACTACGACCCAACCAAGTTTGAAGATAGCCGTGTTCCGATGAAGGTGATGAT 1869 Query 72681 TAAAGATTTAATACGA-GGC-TATAAGCTTGGTGTTAAAACATTCTATTACCATAACACC 72738 | |||| || | || ||| ||||| | |||||||| || | || || ||||||||| Sbjct 1868 TCAAGACTTGTT--GATGGCGTATAAATTAGGTGTTAAGACGCTGTACTATCATAACACC 1811 Query 72739 CGTGATGGTGCCAGTGA 72755 |||||||| || | ||| Sbjct 1810 CGTGATGGCGCAAATGA 1794 >seq15063 Length=3774 Score = 141 bits (156), Expect = 6e-29 Identities = 338/501 (67%), Gaps = 19/501 (4%) Strand=Plus/Plus Query 73469 TTCGCATGTTCATTTGCTTTTGCAGAACGTGAGCTACTTGAAGGTAATGCCAAGATTATT 73528 || || ||||||||||| ||||| || || | || | |||||||||||||| || || Sbjct 2725 TTTGCTTGTTCATTTGCCTTTGCTGAGCGCAAACTGATGGAAGGTAATGCCAAAATCATC 2784 Query 73529 AAACTAATCGCCCGTGATGAAGCCTTGCACTTAACTGGTACTCAG---ATGATTCTGAAT 73585 ||| | || |||||||| ||||| | || ||| || || ||| |||||| ||| Sbjct 2785 AAAATGATTGCCCGTGACGAAGCGCTTCATCTAAACGGCACCCAGCATATGATT---AAT 2841 Query 73586 AACTGGCGAACTGGCAAGGATGATCCTGAAATGCAAGAGATTGCAGAAGACCTTAAAGAT 73645 || | | || || ||||| ||||| ||| || || || |||| || | Sbjct 2842 TTGATGCAATCGGGTAAAGATGACCCTGACATGGTCGAAATCGCCCAAGATTGCCAACA- 2900 Query 73646 GTAAGTC-TTAAGATCTTTATGGATGTTGTTGAAGAAGAAAAGCAATGGGCAAAATATCT 73704 | ||| | || | || || | || | | |||| ||||||| |||||||||||| | Sbjct 2901 GCAAGCCATTGAAATTTTCAAAGACGCGGCTGAACAAGAAAAAGCATGGGCAAAATACTT 2960 Query 73705 ATTCAAAGATGGGTCAATGATCGGTCTTAATGAAGAAATACTTTG-CCAGTACGTTGAGT 73763 || |||||||| |||||||| || | |||||| | || ||| | || || || |||| Sbjct 2961 GTTTAAAGATGGCTCAATGATTGGCTTGAATGAAAATAT-CTTGGTGCAATATGTCGAGT 3019 Query 73764 ACATTGCTAATCATCGTTTACATAGCCTAGGCTTTGAAAAACCATTTGATATTAAGTCTA 73823 ||||| | |||| || | || | ||||| ||| |||||||| | Sbjct 3020 ACATTACCAATCTACGCATGGATGCGATTGGCTT------ACC-GCCGATATTAAAAACA 3072 Query 73824 ATCCTATTCCGTGGATTAGCTCTTATCTAACAAGTGATAATGTGCAAGTTGCACCTCAAG 73883 | || ||||| ||||||| ||| | | || || |||||||| || || |||| Sbjct 3073 ACCCAATTCCATGGATTAATGCTTGGTTGTCCTCAGACAACGTGCAAGTCGCGCCCCAAG 3132 Query 73884 AAACTGAAATTACATCGTACTTAGTTGGTCAAGTTGACTCA-AGTTTGGAAGATGATGAT 73942 | | ||||| || || |||||||| |||||| ||||| || || | | || |||| Sbjct 3133 AGTCAGAAATCACCTCTTACTTAGTCGGTCAAATTGACGCAGAGCTCAG-TGACGATGCG 3191 Query 73943 TTCGATGAATTTGATTTATAA 73963 || ||||| ||||| || ||| Sbjct 3192 TTTGATGATTTTGAATTGTAA 3212 Score = 125 bits (138), Expect = 5e-24 Identities = 250/371 (67%), Gaps = 7/371 (2%) Strand=Plus/Plus Query 72884 ATGTTCTTAGGTCAACATGTAAACGTATCTCGGTACGACCAACAAAAGCTTAGTGCATTT 72943 ||||| || ||||| | ||| || || | || |||||||||||||| | || || Sbjct 2162 ATGTTTTTTGGTCAGCCTGTCAATGTGGCACGTTACGACCAACAAAAATTCCCTGTTTTC 2221 Query 72944 GAAAAATTAATAGAAAAACAATTGAGCTTCTTTTGGCGACCTGATGAAATAGATGTATCA 73003 || | || || ||||| |||||| || |||||||| || || ||||| || || || Sbjct 2222 GAGCAGTTGATTGAAAAGCAATTGTCGTTTTTTTGGCGTCCAGAAGAAATTGACGTTTCC 2281 Query 73004 AAAGACCGTTCTGATTGGCAAAAAATGACTGACTCTGAAAAGCATATTTTCATATCAAAT 73063 |||||||||| |||| || || | | |||| ||||||| ||| || || Sbjct 2282 AAAGACCGTTTGGATTTTAGCAACTTGTCAGTGCATGAACAGCATATCTTCTTAAGTAAC 2341 Query 73064 CTTAAATACCAAACATTGCTTGATAGCATGGCTGCACGTTCTGTTAATATGGTATTACTT 73123 || || |||||||| ||||||||| || | ||| ||| || |||| Sbjct 2342 CTAAAGTACCAAACCTTGCTTGATTCGATTCAAGGTCGTAGCCCCAATGCCGTGCTACTG 2401 Query 73124 CCACTTGTATCTTTACCTGAAGTTGAAACATGGATTGAAACATGGGCATTTAGTGAAACT 73183 || || | ||||| | ||||| ||||||||||| ||| ||||| ||| || Sbjct 2402 CC-------TCGATTCCTGAGTTAGAAACCTGGATTGAAACTTGGTCATTTTCTGAGACC 2454 Query 73184 ATTCACTCTCGCTCATATACTCATATCTTGCGTAACCTTTTCGTAGATCCAAGTGAAGTA 73243 || || ||||| ||||| ||||| | |||||| | || || ||||| ||||| Sbjct 2455 ATCCATTCTCGTAGCTATACCCATATTATTCGTAACGTGGTCAATGACCCAAGCAAAGTA 2514 Query 73244 TTTGATGATAT 73254 || |||||||| Sbjct 2515 TTCGATGATAT 2525 >seq9261 Length=1173 Score = 87.8 bits (96), Expect = 1e-12 Identities = 263/404 (65%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 70669 CATATCCAATTTTATGAAGGTATGAAGACAGAAGATATTCACGAAATAATCATTAAAGCA 70728 || ||||| |||||||| || | || || || || |||| ||||||||| || Sbjct 444 CACATCCAGTTTTATGATAAAATCACCACCAAAAGCATCCATGAAACCATCATTAAATCA 385 Query 70729 GCAGCAGATTTAATATCGGTTGACACTCCTGATTATCAGTATCTCTCATCTCGTTTAGCC 70788 || |||||||| || || | | || ||||||||||| ||| | || | || || || Sbjct 384 GCTGCAGATTTGATTTCTGCGGCAACGCCTGATTATCAATATTTGGCAGCGCGATTGGCA 325 Query 70789 GTATTTCATTTACGTAAACAAGCCTATGGTGATTTTGTACCACCTCGCCTTATCAACCAT 70848 | ||||||||||| ||| || | |||| | |||| || || | | | ||||| Sbjct 324 ATTTTTCATTTACGCAAAATCGCGTTTGGTCAGTTTGAGCCGCCGCATTTATTTGACCAT 265 Query 70849 ATAGCTAAGTTGACAGATAGTGGTCATTATGATAAAGAAATTCTTGAAGATTTTACCATT 70908 | | || |||| | |||| ||| ||| | ||| | |||| |||| || Sbjct 264 GTCACCAAACTGACCCAAGAAGGTCGTTACGATGCCCATATTTTGCAAGACTTTAGCAAA 205 Query 70909 GGTGAAATTGAAGAATTAGGTAATTACATTCAGCATGACCGTGATATGAATATTGCCTAT 70968 | ||| |||| | | | | || ||| | || |||||||| | | |||| ||| Sbjct 204 GAAGAATTTGATATACTCAATGACTATATTGACCACAACCGTGATTTAAGCTTTGCGTAT 145 Query 70969 GCAGGTATTAAGCAATTAATCGGTAAGTATTTGGTTCAGGACAGAGTTAATGGTATTA-- 71026 || | | || ||| | || || |||||||| || ||| | || | | | | Sbjct 144 GCCGCCGTCAAACAAATGGAAGGCAAATATTTGGTGCAAGACCGCGTCA--GCAAACAAG 87 Query 71027 TCTTTGAAACCCCTCAAATGCTTTATATGCTTGTTGGTATGTGT 71070 ||||||||| ||| ||| | | || ||||| |||||||||||| Sbjct 86 TCTTTGAAAGCCCACAATTTTTGTACATGCTCGTTGGTATGTGT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335534702093890