Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq24624 500 1e-136 seq29915 340 2e-88 seq32525 298 6e-76 seq6217 118 1e-21 seq20192 91.5 2e-13 >seq24624 Length=74067 Score = 500 bits (554), Expect = 1e-136 Identities = 642/884 (73%), Gaps = 6/884 (1%) Strand=Plus/Minus Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 || ||||| || |||| ||| ||||| |||||||| | || |||||| | || || || Sbjct 18437 TTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTA 18378 Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723 || ||||| ||||| ||||| |||||||| | |||||| ||| ||||| ||| | Sbjct 18377 CTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTG 18318 Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCT 162783 ||||| |||||||| |||||||| ||| || ||||||| ||||| ||||| || || ||| Sbjct 18317 CACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAACGGCGGTCCT 18258 Query 162784 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 162843 | |||| | | | |||||| | | || | | ||| || ||| ||||| Sbjct 18257 TATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGG 18198 Query 162844 GAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 162903 |||||| || || || ||||||||||||||||| ||||||||| || || || || Sbjct 18197 GAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 18138 Query 162904 TCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 162963 | || || ||||| |||||| |||||||| | ||||| || || || || | Sbjct 18137 GCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGT 18078 Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||||| || ||||| ||||||| || | ||| | || || || || |||| || Sbjct 18077 ATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAGGCTAAGCATAAT 18018 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083 || || ||||| || || || ||| | | || || ||||||||||| || || | || Sbjct 18017 ATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGCGGCTCCTTATTC 17958 Query 163084 AGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAG 163143 ||||||||||| ||||| | || |||||| | | ||||| ||||| || || | || Sbjct 17957 AGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 17898 Query 163144 TCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCT 163203 || || | ||||| | || || ||||| ||||| || || || ||||| |||||| Sbjct 17897 TCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCT 17838 Query 163204 CATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTT 163263 ||||| || ||||| || ||||||||||| |||||| ||||||||| || ||||| | Sbjct 17837 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTA 17778 Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323 || |||||| | ||||| | ||||| || | || ||||| || || | ||| | Sbjct 17777 CATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGC 17718 Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGT 163380 |||||||| |||||| | || |||||||| |||||||||||||| ||||| |||| Sbjct 17717 ACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 17658 Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440 || || ||| ||| ||||| ||||| ||||| |||| |||||||||||||| Sbjct 17657 CGT---GTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTA 17601 Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGC 163484 ||||| || ||||||||||| || ||||| || || || ||||| Sbjct 17600 ATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGC 17557 >seq29915 Length=314255 Score = 340 bits (376), Expect = 2e-88 Identities = 440/608 (72%), Gaps = 0/608 (0%) Strand=Plus/Plus Query 162685 TCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAA 162744 |||||||| | |||||| ||| ||||| ||| | ||||| |||||||| |||||| Sbjct 233364 TCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAA 233423 Query 162745 GCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCAC 162804 || ||| || ||||||| ||||| ||||| || | |||| |||| | || | ||| Sbjct 233424 GCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACAC 233483 Query 162805 TTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGT 162864 ||| | | || | | ||| || ||| ||||||||||| || || || ||| Sbjct 233484 TTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGT 233543 Query 162865 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTC 162924 |||||||||||||| ||||||||| || || || || | || || ||||| ||| Sbjct 233544 ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTC 233603 Query 162925 TTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGT 162984 ||| |||||||| | ||||| || || || || | |||||||| || ||||| ||| Sbjct 233604 TTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGT 233663 Query 162985 ACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCAT 163044 ||||| || | ||| | || || || || ||||| || || || ||||| || || || Sbjct 233664 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 233723 Query 163045 ATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTT 163104 ||| | || || || ||||||||||| || || || || ||||||||||| ||||| | Sbjct 233724 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 233783 Query 163105 GTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAG 163164 || |||||| | | ||||| ||||| || || | || || || | ||||| | Sbjct 233784 GTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 233843 Query 163165 TTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTG 163224 || || ||||| ||||| || || || ||||| ||||||||||| || ||||| || ||| Sbjct 233844 TTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 233903 Query 163225 ATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTC 163284 |||||||| |||||| ||||||||| || ||||| | || |||||| | ||||| | Sbjct 233904 ATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGG 233963 Query 163285 CCTGTGGT 163292 ||||| || Sbjct 233964 CCTGTAGT 233971 >seq32525 Length=219324 Score = 298 bits (330), Expect = 6e-76 Identities = 447/635 (70%), Gaps = 0/635 (0%) Strand=Plus/Plus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| || ||||| | || | || ||||| ||||| |||||| Sbjct 125566 TGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 125625 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 || ||| || | | ||| | || || || || || || ||||| || |||||| Sbjct 125626 ATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTTATTGCTGCCCCTCCA 125685 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | || |||||| | || || || || ||||| ||||| ||| Sbjct 125686 GTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATC 125745 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || |||||||| | |||||| ||| ||||| ||| | ||||| |||||||| ||| Sbjct 125746 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGG 125805 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 | ||| ||| || ||||||| ||||| || || || || |||| |||| | || | Sbjct 125806 GGAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTA 125865 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| || ||| ||||||||||| || || || Sbjct 125866 CACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTG 125925 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 ||||||||||||||||| ||||||||| || || || || | || || ||||| Sbjct 125926 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTT 125985 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 || ||| |||||||| | ||||| || || || || | |||||||| || ||||| Sbjct 125986 TTTTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCA 126045 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 | |||||| || | ||| | || || || || |||| || || || ||||| || || Sbjct 126046 GATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCATCCATTT 126105 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || ||||||||||| || || || || ||||||||| | ||||| Sbjct 126106 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTATGGTTCC 126165 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136 | || |||| | | | ||||| ||||| || || Sbjct 126166 TTGGTAACTTTTAGTTTGATCAGGGAAACCACAGA 126200 >seq6217 Length=83728 Score = 118 bits (130), Expect = 1e-21 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| |||||||| | ||||| || || || || | |||||||| || Sbjct 30546 GCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGA 30605 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 ||||| | |||||| || | ||| | || || || || |||| || || || ||||| Sbjct 30606 ATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCAT 30665 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| || || || || ||||||||||| Sbjct 30666 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 30725 Query 163096 GGTTCT-----CTT-GTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136 |||| | ||| || |||| | | | ||||| ||||| || || Sbjct 30726 GGTTATGGTTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGA 30772 >seq20192 Length=443579 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 162983 GTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCC 163042 ||||||| || | ||| | || || || || ||||| || || || ||||| || || | Sbjct 96327 GTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTC 96268 Query 163043 ATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTC 163102 | ||| | || || || ||||||||||| || || || || ||||||||||| ||||| Sbjct 96267 ACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCT 96208 Query 163103 TTGTTACTTCTTCTCTTATCAG--AGAAA 163129 | || |||||| | | ||||| ||||| Sbjct 96207 TGGTAACTTCTAGTTTGATCAGTTAGAAA 96179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552855477214800