Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq30250 134 4e-27 >seq30250 Length=51225 Score = 134 bits (148), Expect = 4e-27 Identities = 337/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 12106 TTAATTATTAACGTTCCACCACGATATTCTAAAACTGAAATTGCTGTAATTAATTTCATG 12165 ||||| |||||| | || || ||||||||||||| || |||| ||| |||| || || Sbjct 33713 TTAATCATTAACCTACCGCCTAGATATTCTAAAACCGAGCTTGCAGTAGTTAACTTTATA 33654 Query 12166 GCTTGGTGTTTTGGTAAGAATCCAGACTGTGAGTTTATTCATATCAGTTACTCGGCAATG 12225 | ||| |||||| | | || |||||||||||||| || || || || | || Sbjct 33653 TCGTGGGCGTTTGGTCAATACCCTGACTGTGAGTTTATCCACTCAAGCTATTCATC--TG 33596 Query 12226 C-TTGCCG-CAAATAATGCCTTCCAAATACGAACTCTTGTACAAGAAGAGGCGTATAGAA 12283 | ||| || |||||||| | |||||| || | ||| | || | ||| | Sbjct 33595 CATTGGCGACAAATAATTCAAGCCAAATTCGCGACATGGTATTGCACGATGAGTACAAGG 33536 Query 12284 AAGTCTTTCCTGAGCTTACAT-TGCGTGATGATAGTAAGGCTAAAGACTTCTGGAGAACT 12342 | ||||| | || ||| | |||||||| || ||||||||| ||||| ||| Sbjct 33535 CGATATTTCCAAATCTG-CATCTAAAAGATGATAGCAAAGCTAAAGACCACTGGAAAACC 33477 Query 12343 TCTCAAGGCGGTGTCTGCTATGCGACAGGTACAGGCGGTACGATTACTGGTTTTGGTGCA 12402 | || |||||||| ||||| || ||| |||| |||||||| || |||||||| || Sbjct 33476 ACGCAGGGCGGTGTAATGTATGCCACTGGTGCAGGTGGTACGATAACAGGTTTTGGCGCG 33417 Query 12403 GGAAAACTTCGTAAAGGCTTTGGTGGCTGCATTATTATTGATGACCCACATAAAGCACAT 12462 || || || | | || ||||| || || || | ||||||||||| ||||| || Sbjct 33416 GGCAAGCTAAGAGATGGTTTTGGCGGTTGTATAGCGTTGGATGACCCACACAAAGCCGAT 33357 Query 12463 GAAGCTTCATCAAAAACTATTCGAGAAGGGGTAATTGATTGGTTTCAGAACACACTCGAA 12522 ||||| | |||| || |||| || ||| |||||||| | ||| || | Sbjct 33356 GAAGCACGAAGCGAAACCATGCGAGCCAATGTTATTAATTGGTTTACCGAGACAATCAAG 33297 Query 12523 TC---GCGTACTAACTCGCCAGATACGCCGATCATTGTGATTATGCAGCGACTTCATGAA 12579 || |||| | || | | || ||||| || || |||||||| || || || || Sbjct 33296 TCAAGACGTAATGACCCAAGCAAAACCCCGATTATCGTTATTATGCAACGGCTGCACGAG 33237 Query 12580 GATGATTTAGCTGGATGGTTGCTAG 12604 |||||||| ||| | ||| ||| Sbjct 33236 AATGATTTAAGTGGTTATTTGTTAG 33212 Score = 89.7 bits (98), Expect = 1e-13 Identities = 171/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 11045 GGTGGATGGCGTAAGGCCAGACAAGAGCAACAGATGCGTGATTGGTTTGGTTTTGTACCT 11104 ||||| ||| ||||| ||||||| |||| ||||||||||||||||| ||| | | Sbjct 34693 GGTGGTTGGAAAAAGGCACGACAAGAAAAACAAATGCGTGATTGGTTTGGATTTACAACA 34634 Query 11105 ACTTATTTAATAACTGTCGACGCTTCTTTCTG-TGAGCGTGCAAACGATACA-GAGT-TC 11161 || || ||||| || | || |||| || ||| | | ||| |||| | | || | || Sbjct 34633 ACCTACTTAATCACACTAGATGCTTATTACTGCTCACAATGC--ACGACAGACGAATATC 34576 Query 11162 TGTTACTTACTTGAACATGAGCTTTACCACATTGGAGTGATGAGAGACGAGGACGGAGAA 11221 | ||| | |||| ||||| | ||||||||| || | | ||||| || || | Sbjct 34575 TAGCACTGA-TTGAGCATGAATTAGCCCACATTGGCGTTAAACGTGACGAAGATGGCAAT 34517 Query 11222 ATTGTTTATAGCGATAGTTCTGGTCTTCCTAAGCACTATCTTGCTGGTCATGACGTTGAA 11281 || | | ||| |||| | || || |||||||| ||||| || ||||||| |||| Sbjct 34516 ATGCTGTTTAGTGATATGACAGGGCTGCCTAAGCATTATCTAGCAAATCATGACATTGAG 34457 Query 11282 GAGTTT 11287 |||||| Sbjct 34456 GAGTTT 34451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144986068390040