Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3517 93.3 4e-14 seq21071 89.7 4e-13 seq21796 87.8 2e-12 >seq3517 Length=1029689 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || ||||| ||| || |||| | || Sbjct 701809 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 701868 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||||||||| | ||| |||||| Sbjct 701869 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 701928 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || |||||| | || ||| | ||| | || ||||| ||| Sbjct 701929 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 701988 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || ||||| || || ||| |||| Sbjct 701989 ATTCAGAAGGAATCCACCCTTCACTTGGT 702017 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || ||||| ||| || |||| | || Sbjct 706210 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 706269 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||||||||| | ||| |||||| Sbjct 706270 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 706329 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || |||||| | || ||| | ||| | || ||||| ||| Sbjct 706330 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 706389 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || ||||| || || ||| |||| Sbjct 706390 ATTCAGAAGGAATCCACCCTTCACTTGGT 706418 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| || || || || ||||| ||| || ||| |||| Sbjct 702037 ATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 702096 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || ||||| || || | || ||| || Sbjct 702097 GATACCATAGACAATGTGAAAGCTAAGATTCAG-GACAAGGAAGGTATCCCACCAGACCA 702155 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| ||||||||||| || ||||| | |||||| | ||| | || || ||||| Sbjct 702156 ACAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAA 702215 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| || || |||||||| |||||| |||| || Sbjct 702216 CATCCAGAAGGAATCTACCCTGCACTTGGTGTT 702248 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| || || || || ||||| ||| || ||| |||| Sbjct 706438 ATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 706497 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || ||||| || || | || ||| || Sbjct 706498 GATACCATAGACAATGTGAAAGCTAAGATTCAG-GACAAGGAAGGTATCCCACCAGACCA 706556 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| ||||||||||| || ||||| | |||||| | ||| | || || ||||| Sbjct 706557 ACAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAA 706616 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| || || |||||||| |||||| |||| || Sbjct 706617 CATCCAGAAGGAATCTACCCTGCACTTGGTGTT 706649 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || || ||||| ||| || |||| || Sbjct 706894 ATGCAAATATTTGTGAAGACTCTGACAGGGAAGACCATAACCTTGGAGGTGGAAAGCTCT 706953 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||| | || ||||| ||||| | || |||||| Sbjct 706954 GATACCATTGATAATGTGAAAGCAAAGATTCAG-GACAAGGAGGGTATTCCACCAGATCA 707012 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||| ||||| || || |||||||||||| | || |||| ||||| || Sbjct 707013 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCGGATTACAA 707072 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||| || ||||| || ||||| Sbjct 707073 TATTCAGAAGGAATCCACCCTGCA 707096 >seq21071 Length=2748687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || ||||| || ||||| ||| || ||| |||| Sbjct 2708929 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACCTTGGAGGTGGAGAGTTCA 2708870 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || || || ||||| | ||| ||| || Sbjct 2708869 GATACCATAGACAATGTGAAAGCCAAGATTCAA-GATAAGGAGGGTATCCCCCCAGACCA 2708811 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || ||||| | |||||| ||| | || |||||||| Sbjct 2708810 GCAGAGGCTTATCTTTGCTGGTAAACAGCTTGAAGATGGACGAACCCTTGCAGATTATAA 2708751 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||| || || |||||||| |||||| |||| || || Sbjct 2708750 CATCCAGAAGGAATCTACCCTGCACTTGGTTTTGAG 2708715 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || ||||| || || ||| ||| ||| Sbjct 2708701 ATGCAAATCTTTGTTAAGACTTTGACCGGAAAAACAATAACTTTAGAAGTTGAAAGTTCT 2708642 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| ||| || ||||||||||| | || ||| || Sbjct 2708641 GATACCATCGATAACGTGAAGGCAAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 2708582 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || || |||||||| | ||| | || |||||||| Sbjct 2708581 CAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACTCTTGCTGATTATAAT 2708522 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || || || |||||||| |||| || || | || ||||| || Sbjct 2708521 ATCCAGAAGGAGTCCACTCTGCATTTGGTGTTGAGGCTTCGTGGAGGTAT 2708472 >seq21796 Length=372373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||||||||| | || |||||||||||| || |||||||| || || || | ||| Sbjct 98954 GACAAAGAGGGTATCCCACCAGATCAACAGAGGCTCATCTTTGCTGGAAAGCAGCTAGAA 99013 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||| |||| ||||| ||||| |||||||||||||| || ||| |||| Sbjct 99014 GATGGCCGAACCTTGGCTGATTACAACATCCAAAAAGAATCTACCCTCCACTTGGT 99069 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || ||||| ||| || ||| || Sbjct 99089 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 99148 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || |||| || || | || |||||||| || | || ||| || Sbjct 99149 GACACTATTGACAATGTCAAAGCCAAGATTCAG-GACAAAGAAGGTATCCCACCAGACCA 99207 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| || || ||||| |||||||| | |||||| ||| |||| ||||| || Sbjct 99208 ACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAA 99267 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| |||||||||||||| || ||| |||| Sbjct 99268 CATCCAAAAAGAATCTACCCTCCACTTGGT 99297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425232826121430