Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq24624 506 6e-139 seq32525 336 7e-88 seq29915 329 1e-85 seq6217 127 6e-25 seq20192 95.1 4e-15 >seq24624 Length=74067 Score = 506 bits (560), Expect = 6e-139 Identities = 657/903 (73%), Gaps = 4/903 (0%) Strand=Plus/Plus Query 17825 GTTGATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAA 17884 || ||| | ||||| |||||| ||||| |||||||||||||| || ||||| ||||| | Sbjct 17550 GTCGATCGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCAT 17609 Query 17885 GCCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGC 17944 ||||||||||||| ||| | | |||||||| ||| | || | ||| | | Sbjct 17610 ACCAAGGTTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC 17669 Query 17945 TACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCAT 18004 || | |||||||||||| ||||| ||||| | || |||||||||||| ||| || | Sbjct 17670 AACTACGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAA 17729 Query 18005 AGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCT 18064 || ||||| ||| || | || ||||||||||| ||||||||||||| | | Sbjct 17730 AGCGGTAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGA 17789 Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124 |||||| || || ||||| |||||||| | || ||||| || |||||||| || ||||| Sbjct 17790 ATTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 17849 Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184 |||||| || ||||| ||||| |||||| | || || | || ||| ||| || || Sbjct 17850 ATTATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 17909 Query 18185 CGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 18244 ||||| || || | ||||| || | || ||||||||| |||||| | || Sbjct 17910 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCC 17969 Query 18245 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGC 18304 |||||||| || || ||| | | ||| || || ||||||||||| ||||| || | || Sbjct 17970 GCCGAATACACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGC 18029 Query 18305 TTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAA 18364 || ||||| | ||| |||||| ||||||| ||| || |||||||||||||| || || Sbjct 18030 CTGAAATACAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAA 18089 Query 18365 ACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCG 18422 || || || |||| |||||| | | ||||| || | || | || ||||| || || || Sbjct 18090 GCTTCCCTGACCAATAGGATAGATCAAGAAA-ACAGCAGTA-GCGGCTGCAACAGGAGCT 18147 Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 18482 ||||| |||||| |||||| || |||||||| | | | ||||||||||||| | || Sbjct 18148 GAATATGCAACAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGC 18207 Query 18483 CCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 18542 |||||||| || | || | | ||||| | | ||| |||| ||| || || ||| Sbjct 18208 CCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCG 18267 Query 18543 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 18602 ||||||||||| || || | | ||| |||||||| || || || ||||| | ||| || Sbjct 18268 TTATATAACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATA 18327 Query 18603 GCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCT 18662 || ||| | || | || || || || ||||| ||||||||||| |||| | ||| Sbjct 18328 GCCGCAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCA 18387 Query 18663 GAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAA 18722 || |||||||||||||||||||| || || || |||| ||||||| ||| | || | | Sbjct 18388 GAAACAGGCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATAATA 18447 Query 18723 AAT 18725 ||| Sbjct 18448 AAT 18450 >seq32525 Length=219324 Score = 336 bits (372), Expect = 7e-88 Identities = 433/595 (73%), Gaps = 2/595 (0%) Strand=Plus/Minus Query 18224 CATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATG 18283 ||||||| ||||| | || |||||||| || || ||||| | ||| || || ||||| Sbjct 126156 CATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATG 126097 Query 18284 CATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACC 18343 |||||| ||||| || | || || ||||| | ||| |||||||||||| | ||| || Sbjct 126096 CATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAAATTCC 126037 Query 18344 AAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGAGAAATACTG-AGA 18402 |||||||||||||| || || || || || |||| |||||| | | ||| || | || Sbjct 126036 TAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAAAAAACAGCAGT 125977 Query 18403 AGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTAT 18462 || | ||||| || || || ||||| |||||| |||||| || |||||||| | | | Sbjct 125976 AG-CGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGAA 125918 Query 18463 AACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAA 18522 ||||||||||||| | || |||||||| || | || | | ||||| | |||| Sbjct 125917 AACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAA 125858 Query 18523 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 18582 | |||| ||| || || ||||| |||||||| || || | | ||| ||| |||| || | Sbjct 125857 TTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTCCCCAAATAG 125798 Query 18583 GGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGT 18642 | || ||||| | ||| || || ||| | || | || || || || ||||| |||| Sbjct 125797 GATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATGATATTGT 125738 Query 18643 TTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAG 18702 ||||||| |||| | ||| || |||||||||||||||||||| || || || ||||| | Sbjct 125737 TTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 125678 Query 18703 CAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTA 18762 |||||| ||| || || | |||| | | || |||||| || | | ||| ||||| | | Sbjct 125677 CAGCAATAAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGAATCATCAAAA 125618 Query 18763 CCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 | |||||||| || | ||| || || || | || || || | ||||| ||| || Sbjct 125617 CACCAAACCATCCAATGTAAAGACGATTTTCGGTGCTGGTTATCCAGTTACAGAA 125563 >seq29915 Length=314255 Score = 329 bits (364), Expect = 1e-85 Identities = 424/580 (73%), Gaps = 4/580 (1%) Strand=Plus/Minus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| ||||||||||||| | | |||||| || || ||||| ||| Sbjct 233968 ACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATATTGG 233909 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | || ||||| || |||||||| || ||||||||||| || ||||| ||||| Sbjct 233908 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGA 233849 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAA 18206 |||||| | || || | || ||| ||| || || ||||| || || | ||| Sbjct 233848 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 233789 Query 18207 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 18266 || || | || ||||||||| ||||| | || |||||||| || || ||||| Sbjct 233788 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 233729 Query 18267 AGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTG 18326 | ||| || || ||||||||||| ||||| || || || || ||||| | ||| |||||| Sbjct 233728 AACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTG 233669 Query 18327 AAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAA 18386 |||||||| ||| || |||||||||||||| || || || || || |||| |||||| Sbjct 233668 AAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAG 233609 Query 18387 A-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACG 18444 | | ||||| || | || || | ||||| || || || ||||| |||||| |||||| | Sbjct 233608 ATCAAGAAA-ACAGCAGTAG-CGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAG 233551 Query 18445 GGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGA 18504 | |||||||| | | | ||||||||||||| | || |||||||| || | || | Sbjct 233550 GACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACACCAA 233491 Query 18505 TGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGG 18564 | ||||| | ||||| |||| ||| || | |||||||||||||| || || | | Sbjct 233490 GTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAATAG 233431 Query 18565 TTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 ||| |||||||| || || || ||||| | ||| || || Sbjct 233430 ATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 233391 >seq6217 Length=83728 Score = 127 bits (140), Expect = 6e-25 Identities = 135/177 (76%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 30727 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 30668 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 ||||||||||| ||||| || | || || ||||| | ||| |||||||||||| | | Sbjct 30667 GGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAA 30608 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAA 18394 || || |||||||||||||| || || || || || |||| |||||| | | ||||| Sbjct 30607 ATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAA 30551 >seq20192 Length=443579 Score = 95.1 bits (104), Expect = 4e-15 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 96213 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 96272 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTAC 18333 ||||||||||| ||||| || || || || ||||| | ||| ||||||||||||| Sbjct 96273 GGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTAC 96327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151258796627980