Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq24624 488 2e-133 seq29915 340 5e-89 seq32525 282 1e-71 seq6217 116 1e-21 seq20192 91.5 4e-14 seq29178 86.0 2e-12 seq646 86.0 2e-12 >seq24624 Length=74067 Score = 488 bits (540), Expect = 2e-133 Identities = 649/895 (73%), Gaps = 10/895 (1%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || || || || ||||| || || || || || |||||||| || || | |||||||| Sbjct 17560 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 17619 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||||| ||| ||||||||||| || || || | || | | | | | | ||| Sbjct 17620 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 17679 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAGCAA 21648 ||||| || ||||||||||| |||||||||||||| || || || ||||| | || Sbjct 17680 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCG--GTAA 17737 Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708 ||||||||||||| |||||||| ||||| | |||||||| | | ||| ||||| || | Sbjct 17738 ACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGA 17797 Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768 | || |||||||||||||| | || |||||||| || |||||||| |||||||| || | Sbjct 17798 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGG 17857 Query 21769 TCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCAC 21828 | ||||||||||||||||| ||||||| | || || | | ||| || || || | Sbjct 17858 TTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 17917 Query 21829 GAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATA 21888 || | || || |||| | ||| ||||||||| ||| || || || |||| Sbjct 17918 TGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCCGCCGAATA 17977 Query 21889 CGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACA 21948 | || || ||| ||| ||||||||| ||||||||||||||||| |||| |||||| || | Sbjct 17978 CACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATA 18037 Query 21949 CCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCT 22008 | | ||| | ||| | || || || || || | |||||| |||| ||||| |||| Sbjct 18038 CAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCT 18097 Query 22009 GTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAA 22068 | |||| ||||| | | ||| |||||||| || || || |||||||| || || |||| Sbjct 18098 GACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAA 18157 Query 22069 CAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAG 22128 || ||||| || | ||| || | ||| | |||||||||||||| || ||||||| || Sbjct 18158 CAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGT-AG 18216 Query 22129 CAA-AGACGCCAATGAGGAAGTG--GAATACGGTGAGTTGGAATGGACCGCCGTTGTACA 22185 ||| || |||| | |||||| ||||| | |||| | ||||||||||| || | Sbjct 18217 CAAGCTACACCAAGTAAGAAGTGTAGAATA--ATTAGTTCATAAGGACCGCCGTTATATA 18274 Query 22186 GCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTAC 22245 ||||||||||| | || ||||||||||| || || ||||| | || || || | Sbjct 18275 ACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAG 18334 Query 22246 TGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGG 22305 | |||| | ||| || || ||||| ||||| ||||| | || || |||| || | Sbjct 18335 AAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 18394 Query 22306 GTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA 22360 | || || || ||||| || || || | || || ||| ||| | ||||||||| Sbjct 18395 GCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATAATAAA 18449 >seq29915 Length=314255 Score = 340 bits (376), Expect = 5e-89 Identities = 420/572 (73%), Gaps = 2/572 (0%) Strand=Plus/Minus Query 21658 CTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCAT 21717 |||| |||||||| ||||| | |||||||| | | ||| ||||| || || || |||| Sbjct 233973 CTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCAT 233914 Query 21718 ATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCT 21777 |||||||||| | || |||||||| || |||||||| |||||||| || || ||||||| Sbjct 233913 ATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCT 233854 Query 21778 CTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTG 21837 |||||||||| ||||||| | || || | | ||| || || || | || | Sbjct 233853 CTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAAC 233794 Query 21838 ACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCA 21897 || || |||| | ||| ||||||||| ||| | || || ||||| || || | Sbjct 233793 TAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTA 233734 Query 21898 CACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGT 21957 |||| | ||||||||| ||||||||||||||||| ||||||||||| || || | ||| Sbjct 233733 CACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAA 233674 Query 21958 AGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACG 22017 | ||||| || || || || || | |||||| |||| ||||| ||||| |||| | Sbjct 233673 AATTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAG 233614 Query 22018 GATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCC 22077 |||| | | ||| |||||||| || || || |||||||| || || |||||| |||| Sbjct 233613 GATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCC 233554 Query 22078 AGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-ACG 22136 | || | ||| || | ||| | |||||||||||||| || |||||||| |||| || Sbjct 233553 AAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTA-GCAAGCTACA 233495 Query 22137 CCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCA 22196 |||| | |||||| | || | |||| | ||| ||||||| || | |||||||||| Sbjct 233494 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCA 233435 Query 22197 AGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 | | || ||||||||||| || || ||||| Sbjct 233434 ATAGATGCCGCTTCCCAAATAGGATAAAAGTG 233403 >seq32525 Length=219324 Score = 282 bits (312), Expect = 1e-71 Identities = 448/636 (70%), Gaps = 6/636 (1%) Strand=Plus/Minus Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902 || |||| | ||| | ||||||| ||| | || || ||||| || || ||||| Sbjct 126173 GTTACCAAGGAACCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 126114 Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962 | ||||||||| ||||||||||||||||| |||| |||||| || || | ||| | ||| Sbjct 126113 AACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTG 126054 Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022 || || | || || || | |||||| |||| ||||| ||||| |||| ||||| Sbjct 126053 AAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAG 125994 Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGC 22082 | | || |||||||| || || || |||||||| || || |||||| ||||| || Sbjct 125993 ATCAAAAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 125934 Query 22083 CTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-ACGCCAAT 22141 | ||| || | ||| | |||||||||||||| || |||||||| |||| || |||| Sbjct 125933 CGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTA-GCAAGCTACACCAAG 125875 Query 22142 GAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGT 22201 | |||||| | || | |||| | |||||||||||||| | ||||||||||| | Sbjct 125874 TAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGA 125815 Query 22202 AGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGC 22261 || ||| ||||||| || || ||||| | || || || | | |||| | ||| Sbjct 125814 TGCCGCTCCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAATGGC 125755 Query 22262 TCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATC 22321 || || ||||| ||||| ||||| | || || |||| || || || || || ||||| Sbjct 125754 ACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATC 125695 Query 22322 GATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGA 22380 || || || || || || ||| ||| ||||||||||| || || |||| ||| | Sbjct 125694 AATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACAGAAGTTGCGGTCAATAA 125635 Query 22381 GGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGAGGTGA 22440 | | |||||||| | || || |||||||| | |||||||| || | || ||| | Sbjct 125634 AGTA-GGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTGCTGGTTA 125576 Query 22441 CCCAGGAACAAAACTGCTCCC--AGGCATTCTCTCT 22474 |||| ||| || | ||| |||| ||| |||| Sbjct 125575 TCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTCT 125540 >seq6217 Length=83728 Score = 116 bits (128), Expect = 1e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 21854 ACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAA 21913 ||| ||||||||| ||| | || || ||||| || || ||||| | ||||||||| Sbjct 30728 ACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAA 30669 Query 21914 AGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGA 21973 ||||||||||||||||| |||| |||||| || || | ||| | ||||| || | || Sbjct 30668 TGGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGA 30609 Query 21974 TATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACAC 22033 || || | |||||| |||| ||||| ||||| |||| ||||| | | ||| || Sbjct 30608 AATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAAC 30549 Query 22034 AGCAGTCGC 22042 |||||| || Sbjct 30548 AGCAGTAGC 30540 >seq20192 Length=443579 Score = 91.5 bits (100), Expect = 4e-14 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACA 21899 || || |||| | ||| ||||||||| ||| | || || ||||| || || ||| Sbjct 96198 GAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACA 96257 Query 21900 CCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAG 21959 || | ||||||||| ||||||||||||||||| ||||||||||| || || | ||| | Sbjct 96258 CCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAA 96317 Query 21960 TTGAAGGT 21967 ||||| || Sbjct 96318 TTGAAAGT 96325 >seq29178 Length=161839 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 21677 AAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACC 21736 ||| |||||||| | | ||| ||||| || || || ||||||||||| || | | || Sbjct 119162 AAGTAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATATTGGAATATCAATGGGCC 119103 Query 21737 AAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 |||||| || ||| | | |||||||| | || |||| |||||||||||| ||||||| Sbjct 119102 AAAATAACCATGAACGACTACAATATTATTGGTTTCTTTCTCTTGACCAAATATGTAACC 119043 >seq646 Length=2337744 Score = 86.0 bits (94), Expect = 2e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 22095 CGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-ACGCCAATGAGGAAGTGGAA 22153 ||| | |||||||||||||| || |||||||| |||| || |||| | |||||| | Sbjct 1979756 CGAAAACTAAGTTCCCACTCACGCCCCATGTA-GCAAGCTACACCAAGTAAGAAGTGTAG 1979698 Query 22154 TACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCA 22213 || | |||| | |||||||||||||| | ||||||||||| | | |||||||| Sbjct 1979697 AACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGTCGCTTCCCA 1979638 Query 22214 AATTGGGTAGAAGT 22227 ||| || || |||| Sbjct 1979637 AATAGGATAAAAGT 1979624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146150409582600