Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10089 114 2e-20 seq20448 109 7e-19 seq27061 105 8e-18 seq1145 105 8e-18 seq26036 104 3e-17 seq14584 102 1e-16 seq14952 100 3e-16 seq10803 93.3 5e-14 seq19384 86.0 7e-12 seq13074 84.2 3e-11 seq25784 82.4 9e-11 seq10304 82.4 9e-11 >seq10089 Length=680993 Score = 114 bits (126), Expect = 2e-20 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||| | || |||||||||| ||||||| ||||||| | || |||| || | Sbjct 148798 GGGACTTTGACTATGATTACTTTGGTTTCAAAACTCTTGAGAGGTCATACCTCTTGAA-G 148740 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||||| || ||| ||||||| ||| |||| || | || || Sbjct 148739 GTTCAA-GGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAAT 148681 Query 75247 CCACGGGGAAGACATTGATTCTG-TCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 || ||| ||||||||||||| | | || |||||| ||| |||||| || | || Sbjct 148680 TCATAAGGATGACATTGATTCTGCTGTCAGA-ACATACCACATGATGTCTCAGAGATGGT 148622 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||| ||| ||| | ||||| || |||||||| || ||||| || || ||| Sbjct 148621 TCACTCATGCATCTCCAACACTTTTCAATGCAGGAACACCTAGGCCTCAG 148572 >seq20448 Length=1126904 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| |||||||| | || || || || || ||||| || ||||||||||| Sbjct 920475 TCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGTCGAGGGAATATTCTTCTCCGGAAGC 920534 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | |||| | |||||||| || | ||||| || || |||||| || Sbjct 920535 TTCTGCGCGATATTTTGGCTCAAGAAGCGTGGGTTAATGCCGGGGCTCACCTTCTCCAAC 920594 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || || ||||||||||| || ||| Sbjct 920595 GAACTCATCTCGCGAGATGAGGGGCTTCAC 920624 >seq27061 Length=934220 Score = 105 bits (116), Expect = 8e-18 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 75188 |||| ||| | || ||| ||||| ||||||||||||||| | || |||| || || Sbjct 849101 GACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCTCTTGAA-GGT 849043 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 || | || | | |||||| || || ||||||| ||| |||| || | || || | Sbjct 849042 TCAAGGGAAGGTTG-TGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGTTGGGATTC 848984 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308 || ||| ||||| ||||||| | | | |||||| ||| |||||| ||| | ||| | Sbjct 848983 ACAAGGATGACATAGATTCTGCCATCAAAACATACCACATGATGTCTCAACGATGGTTTA 848924 Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| | || || || ||||||||||| ||||| || || || Sbjct 848923 CTCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCA 848878 >seq1145 Length=872046 Score = 105 bits (116), Expect = 8e-18 Identities = 210/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 175345 GCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGA 175403 || || || |||||| || ||||||||| || || | ||| | | | ||||| || Sbjct 257379 GCTATTGCAGGTGAAGCAGGTGTCCCATTTTTCTCAAT-CTCAGGTTCTGAGTTTGTAGA 257321 Query 175404 GATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAA 175463 ||||||||||||||| ||||| | || |||||| | || | ||| || || Sbjct 257320 GATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGCGATTTATTCAGGAAGGCCAAAGAGAA 257261 Query 175464 TCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG 175523 | ||||| ||||| || ||||||| |||||||| || || | |||| | | |||| Sbjct 257260 TGCCCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGG 257201 Query 175524 ---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGAT 175580 |||| || ||||| || |||||||| || | |||||||| | || || || Sbjct 257200 AATTGGT---GGAGGGAATGATGAAAGAGAACAGACCCTCAATCAACTTTTGACAGAAAT 257144 Query 175581 GGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATAT 175640 |||||| ||||| | | || || || | || ||||| || ||||| | || || || Sbjct 257143 GGATGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGGGTTGACAT 257084 Query 175641 CCTTGAT 175647 |||||| Sbjct 257083 TCTTGAT 257077 >seq26036 Length=1795852 Score = 104 bits (114), Expect = 3e-17 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||| | || ||| ||||| ||||||||||||||| | || |||| || | Sbjct 176405 GGGACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCTCTTGAA-G 176347 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | |||| | |||||| || || ||||||| ||| |||| || | || || Sbjct 176346 GTTCAAGGGCAGGTTT-TGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGTTGGGAT 176288 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| ||||| ||||||| | | || ||| ||| |||||| ||| | ||| Sbjct 176287 TCACAAGGATGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTT 176228 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || ||| | || || || ||||||||||| ||||| || || || Sbjct 176227 CACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCA 176180 >seq14584 Length=1259196 Score = 102 bits (112), Expect = 1e-16 Identities = 210/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 175345 GCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGA 175403 || || || |||||| || ||||||||| || || | ||| | | | ||||| || Sbjct 1202049 GCTATTGCAGGTGAAGCAGGTGTCCCATTTTTCTCAAT-CTCAGGTTCTGAGTTTGTAGA 1202107 Query 175404 GATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAA 175463 ||||||||||||||| ||||| | || || ||| | || | ||| || || Sbjct 1202108 GATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGTGATTTATTCAGGAAGGCCAAAGAGAA 1202167 Query 175464 TCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG 175523 | ||||| ||||| || ||||||| |||||||| || || | |||| || | | Sbjct 1202168 TGCTCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAA---AGAGGTAC 1202224 Query 175524 TGGTAT--GC-CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGAT 175580 ||| || || || ||||| || |||||||| || | |||||||| | || || || Sbjct 1202225 TGGAATTGGCGGAGGGAATGATGAAAGAGAACAGACCCTCAATCAACTTTTGACAGAAAT 1202284 Query 175581 GGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATAT 175640 |||||| ||||| | | || || || | || ||||| || ||||| | || || || Sbjct 1202285 GGATGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGAGTTGACAT 1202344 Query 175641 CCTTGAT 175647 |||||| Sbjct 1202345 TCTTGAT 1202351 >seq14952 Length=1323296 Score = 100 bits (110), Expect = 3e-16 Identities = 319/491 (65%), Gaps = 8/491 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| ||| | || | ||||| | || || ||| ||||||| ||||| || Sbjct 652292 TGATGTTGCTGGGGTGGATGAAGCCAAGCAGGACTTTATGGAGGTTGTGGAGTTTCTAAA 652233 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | || ||||| | || ||| || || || ||| | ||||| | || Sbjct 652232 GAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATACCGAAAGGAGTTCTTCTTGTTGG 652173 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | ||||| || || ||||| || | ||| || || || |||||| | ||| || Sbjct 652172 TCCTCCAGGAACTGGGAAGACACTGTTAGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCC 652113 Query 175371 ATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 ||| || || | || | | | ||||| ||||||||||||||||| ||||| Sbjct 652112 ATTTTTCTCAATA-TCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTC 652054 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | ||||| ||| | || | | ||| || ||| || || |||||||| |||||| Sbjct 652053 GTGTTCGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCCCTTGCATTGTCTTTGTTGATG 651994 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGA 175546 | |||||||| || || | ||| | | |||| |||| || ||||| || | Sbjct 651993 AAATTGATGCTGTTGGAAGACAAAGAGGGACTGGAATTGGT---GGAGGGAATGATGAAA 651937 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 |||| || || | || ||||| | || || |||||||| ||||| | | ||||| | Sbjct 651936 GAGAGCAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAACACTGGTA 651877 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGG 175666 | | || |||| || ||||| | | || || ||||| ||| | | | |||| Sbjct 651876 TCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGACCGG 651817 Query 175667 GTCGTTTTGAT 175677 |||| |||||| Sbjct 651816 GTCGGTTTGAT 651806 >seq10803 Length=354954 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| |||||||| | || || | || || | || || |||||||||| Sbjct 196205 TCCTTCGCGGAGCGCCTCATGGCATTCTCTTGCGTCTAAGGAATATTCTTCTCCGAAAGC 196146 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | |||| | |||||||| || | ||| |||| || |||||| ||| Sbjct 196145 TTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGTCAGGGCTCACCTTCTCCAAT 196086 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||| | || || ||||||||||| || ||| | || || || Sbjct 196085 GAATTCATCTCGCGAGATGAGGGGCTTCACTACGACTTCGC 196045 >seq19384 Length=1547856 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 175468 CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGT 175527 || || ||||| ||||||||||||||||| || || || | ||| | | || || | | Sbjct 1452209 CCGTGCATTGTTTTCATTGATGAGATTGACGCCGTTGGGAGGCAGAGAGGGGCGGG-GCT 1452151 Query 175528 ATGCCA-GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | | |||||| ||||| |||||||| |||||||| || || || ||||||||||| Sbjct 1452150 AGGAGGTGGAAATGATGAGAGGGAACAAACTATTAATCAGCTTCTTACTGAGATGGATGG 1452091 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 ||| | | |||| || | ||| | || |||||||| | |||| | ||||| Sbjct 1452090 GTTTTCTGGTAATTCTGGTGTTATTGTTTTGGCTGCCACTAACAGACCGGATGTTCTTGA 1452031 Query 175647 T 175647 | Sbjct 1452030 T 1452030 >seq13074 Length=2244089 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/228 (70%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 75188 |||| ||| | || |||||||||| ||||||||||||||| | || || | || || Sbjct 1144107 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCATACATCCTGAA-GGT 1144049 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 || | || | | |||||| || ||| ||||||| ||| |||| | | || || | Sbjct 1144048 TCAA-GGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGTTGTTGGAATTC 1143990 Query 75249 ACGGGGAAGACATTGATTCTG-TCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 | ||| ||||||||||||| | | || || ||| ||| |||||| || | ||| Sbjct 1143989 ATAAGGATGACATTGATTCTGCTGTCAGA-ACTTACCACATGATGTCTCAGAGATGGTTT 1143931 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | ||| ||| | ||||| || |||||| | | ||||| || || ||| Sbjct 1143930 ACTCATGCATCTCCAACACTTTTCAATAC-AGAACACCTAGGCCTCAG 1143884 >seq25784 Length=99802 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 65104 GAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTC 65163 || ||||||||||||||||| ||||||||| | | ||| | || || || || ||| Sbjct 38658 GAAGGTATCTTCTTCTCCGGAAGCTTCTGCGCTGTCTTCTGGCTCAAAAAACGTGGACTC 38599 Query 65164 ATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 ||||| || || |||||||||||||| || || || ||||| ||||| || Sbjct 38598 ATGCCCGGACTCACTTTCTCAAATGAACTAATATCACGCGATGAAGGTCTTCA 38546 >seq10304 Length=1623844 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/185 (71%), Gaps = 10/185 (5%) Strand=Plus/Minus Query 175468 CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TG 175525 || || ||||| ||||||||||||||||| || || || | ||| | | || || | Sbjct 1515306 CCGTGCATTGTTTTCATTGATGAGATTGACGCCGTTGGGAGGCAGAGAGGGGCGGGGCTC 1515247 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | | | | ||||||||||| ||||| || ||||| || || || || |||||||||| Sbjct 1515246 GGAGGTGGG--AATGACGAGAGGGAACAGACTATTAACCAGCTTCTGACGGAGATGGATG 1515189 Query 175586 GCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCC 175642 |||| || |||| |||| || | ||| | || |||||||| | |||| | | Sbjct 1515188 GCTTTTCTGGCAAT---TCTGGTGTTATTGTTTTGGCTGCCACTAACAGACCGGATGTTC 1515132 Query 175643 TTGAT 175647 ||||| Sbjct 1515131 TTGAT 1515127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596322247329600