Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq24624 477 1e-129 seq29915 327 1e-84 seq32525 315 9e-81 seq6217 152 6e-32 seq20192 113 6e-20 seq2730 82.4 9e-11 >seq24624 Length=74067 Score = 477 bits (528), Expect = 1e-129 Identities = 635/880 (72%), Gaps = 4/880 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| |||| ||||| || || ||||| | ||||||||| ||||||||||| | ||| Sbjct 17560 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 17619 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 |||| ||| ||||| ||| |||| ||| ||| | ||| | | |||||| || | Sbjct 17620 GCTCGGTTAATAATA--TCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGG 17677 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || || || || || | ||| || ||||| |||| ||||| | || || | Sbjct 17678 ATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAA 17737 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAA 8128 |||||| || ||| || || | | ||| | |||||| || | | | | ||||| | Sbjct 17738 ACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGA 17797 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 | |||||| |||||||| |||| ||||| || ||||||||||| ||||||||||||| Sbjct 17798 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGG 17857 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | ||||| ||||||||||| | ||||| | || ||| || | ||| || || || | Sbjct 17858 TTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 17917 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || || ||||| |||||||||||||| | || || ||||| | Sbjct 17918 TGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCCGCCGAATA 17977 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||||| | ||| || || |||||||||||||| ||||||| || || |||| Sbjct 17978 CACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATA 18037 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCT 8428 | | ||| || || | ||||| ||||| ||||||||||| ||||| || || |||| Sbjct 18038 CAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCT 18097 Query 8429 GACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTA 8488 |||||| ||||| | ||||| || || ||| || | || ||||| |||||| | Sbjct 18098 GACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAA 18157 Query 8489 CACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAG 8548 || ||||| || | |||||| || || | | ||||||| | |||||||| Sbjct 18158 CAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGC 18217 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACC 8608 || | |||| | |||||| | |||| | | ||| ||||| |||||||| |||| Sbjct 18218 AAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATATAACC 18277 Query 8609 ACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAG 8668 | ||||| | | || ||||||||||| ||||| ||||| || || ||||| |||| Sbjct 18278 ATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAG 18337 Query 8669 ATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT 8728 |||| | |||||||| ||||| ||||||||||| | | || || | |||||| | Sbjct 18338 TAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCT 18397 Query 8729 CACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAA 8768 |||||||||| || ||||| || | || ||||||||||| Sbjct 18398 CACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAA 18437 >seq29915 Length=314255 Score = 327 bits (362), Expect = 1e-84 Identities = 412/566 (73%), Gaps = 0/566 (0%) Strand=Plus/Minus Query 8122 TTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATA 8181 ||||| || |||||| |||||||| |||| ||||| || ||||||||||| |||||| Sbjct 233929 TTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 233870 Query 8182 TTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTT 8241 |||||||| ||||| ||||||||||| | ||||| | || ||| || | ||| || Sbjct 233869 TTATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 233810 Query 8242 GTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCA 8301 || || ||||| | | ||| || || || ||||| |||||||||||||| || || || Sbjct 233809 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 233750 Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 ||||| | ||| ||||| ||| ||| || || |||||||||||||| |||||||| || Sbjct 233749 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCC 233690 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 || ||||| | ||| || || || ||||| ||||| ||||||||||| ||||| || || Sbjct 233689 TGAAATACAATCATAAAATTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAG 233630 Query 8422 GAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTA 8481 |||||||||| ||||| | ||||| || || ||| || | || ||||| | Sbjct 233629 CTTCCCTGACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAA 233570 Query 8482 TATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCC 8541 ||||| ||| ||||| || | |||||| || || | | ||||||| | ||| Sbjct 233569 TATGCAACAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCC 233510 Query 8542 ATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTA 8601 ||||| || | |||| | |||||| | | || | | ||| ||| | |||||| Sbjct 233509 ATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTA 233450 Query 8602 TACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCG 8661 || ||||| ||||| | | || ||||||||||| ||||| ||||| || || ||||| Sbjct 233449 TATAACCATTCATCAATAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCC 233390 Query 8662 TTGGAAGATGGAACGACAGCACCAGA 8687 |||| |||| | |||||||| Sbjct 233389 GCAGAAGTAGGAATAATGGCACCAGA 233364 >seq32525 Length=219324 Score = 315 bits (348), Expect = 9e-81 Identities = 456/644 (71%), Gaps = 0/644 (0%) Strand=Plus/Minus Query 8197 TCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGA 8256 ||||||||||| | ||||| | || ||| || | ||| || || || ||||| | | Sbjct 126239 TCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 126180 Query 8257 GAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCT 8316 | | || || || ||||| | |||||||||||| || || || ||||| | ||| ||| Sbjct 126179 CTAAAAGTTACCAAGGAACCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCT 126120 Query 8317 ACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATG 8376 || ||| ||| || || |||||||||||||| ||||||| || || ||||| | ||| Sbjct 126119 ACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATA 126060 Query 8377 AAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAAT 8436 || || || ||| | ||||| ||||||||||| ||||| || || |||||||||| Sbjct 126059 AAATTGAAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATA 126000 Query 8437 GGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATC 8496 ||||| | || || || || ||| || | || ||||| |||||| ||| ||| Sbjct 125999 GGATAGATCAAAAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATC 125940 Query 8497 CATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATT 8556 || || | |||||| || || | | ||||||| | |||||||| || | Sbjct 125939 CAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACA 125880 Query 8557 CCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCT 8616 |||| | |||||| | | || | | ||| ||||| ||||| || ||||| ||||| Sbjct 125879 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCA 125820 Query 8617 AATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACG 8676 | | || ||| ||||||| ||||| ||||| || || ||||| |||| |||| Sbjct 125819 ACAGATGCCGCTCCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATA 125760 Query 8677 ACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATA 8736 | |||||||| ||||| ||||||||||| | | || || | |||||| ||||||||| Sbjct 125759 ATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATA 125700 Query 8737 CCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCT 8796 || || ||||| || || || ||||||||||| || | ||||| || || || | Sbjct 125699 CCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACAGAAGTTGCGGTC 125640 Query 8797 AACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 || || ||||||||| | ||| |||||||| || | ||||| Sbjct 125639 AATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAG 125596 >seq6217 Length=83728 Score = 152 bits (168), Expect = 6e-32 Identities = 193/266 (73%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 8197 TCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGA 8256 ||||||||||| | ||||| | || ||| || | ||| || || || ||||| | | Sbjct 30811 TCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 30752 Query 8257 GAAGATGTAACTAAAGAACCGT------GCATAGCACTGAAGAGTGATCCACCGAACATA 8310 | | || || || ||||| | ||||||||||||| || || || ||||| | | Sbjct 30751 CTAAAAGTTACCAAGGAACCATAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 30692 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || ||||| ||| ||| || || |||||||||||||| ||||||| || || ||||| Sbjct 30691 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACA 30632 Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430 | ||| || || || ||| | ||||| ||||||||||| ||||| || || |||||| Sbjct 30631 ATCATAAAATTGAAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 30572 Query 8431 CCAAATGGATATACTAAGAACACTGC 8456 |||| ||||| | ||||| || || Sbjct 30571 CCAATAGGATAGATCAAGAAAACAGC 30546 >seq20192 Length=443579 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | ||| || || || ||||| |||||||||||||| || || || ||||| Sbjct 96186 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 96245 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| ||||| ||| ||| || || |||||||||||||| |||||||| || || ||| Sbjct 96246 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAAT 96305 Query 8368 ACGAACATGAAGTTAAACGTAC 8389 || | ||| || || || |||| Sbjct 96306 ACAATCATAAAATTGAAAGTAC 96327 >seq2730 Length=91666 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 8143 AAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGA 8202 ||||| |||| ||||| || ||||||||||| |||||||||||||| ||||| |||||| Sbjct 1552 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGA 1493 Query 8203 CCAAA 8207 ||||| Sbjct 1492 CCAAA 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615607048052400