Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq24624 488 2e-133 seq29915 340 5e-89 seq32525 282 1e-71 seq6217 116 1e-21 seq20192 91.5 4e-14 seq29178 86.0 2e-12 seq646 86.0 2e-12 >seq24624 Length=74067 Score = 488 bits (540), Expect = 2e-133 Identities = 649/895 (73%), Gaps = 10/895 (1%) Strand=Plus/Minus Query 41327 TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTC 41386 ||||||||| | ||| ||| || || | || || || ||||| || || || || || Sbjct 18449 TTTATTATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 18390 Query 41387 GCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAAT 41446 |||| || || | ||||| ||||| ||||| || || ||| | |||| | | Sbjct 18389 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 18330 Query 41447 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTAC 41506 || || || | ||||| || || ||||||||||| || | ||||||||||| | || Sbjct 18329 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAT 18270 Query 41507 AACGGCGGTCCATTCCAACTCACCGTATTC--CACTTCCTCATTGGCGTCT-TTGCTTAC 41563 ||||||||||| | |||| | ||||| |||||| | |||| || ||||| || Sbjct 18269 AACGGCGGTCCTTATGAACTAAT--TATTCTACACTTCTTACTTGGTGTAGCTTGCT-AC 18213 Query 41564 ATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCG 41623 ||||| || |||||||||||||| | ||| | || ||| | || ||||| |||||| Sbjct 18212 ATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCA 18153 Query 41624 TACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGC 41683 || || |||||||| || || || |||||||| ||| | | ||||| |||| ||||| Sbjct 18152 TATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGA 18093 Query 41684 TCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTC 41743 ||||| |||| |||||| | || || || || || | ||| | ||| | || || Sbjct 18092 AGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTT 18033 Query 41744 CAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTT 41803 |||||| |||| ||||||||||||||||| ||||||||| ||| ||| || || ||||| Sbjct 18032 CAGGCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTC 17973 Query 41804 GGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAG 41863 || || || ||| ||||||||| ||| | |||| || || | || | || Sbjct 17972 GGCGGCTCCTTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAA 17913 Query 41864 ACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTAC 41923 || || ||| | | || || | ||||||| ||||||||||||||||| || || Sbjct 17912 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTAT 17853 Query 41924 AATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAAT 41983 |||||||| |||||||| || |||||||| || | |||||||||||||| || || || Sbjct 17852 AATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAAC 17793 Query 41984 AATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCT 42043 ||||| ||| | | |||||||| | ||||| |||||||| ||||||||||||||| | Sbjct 17792 AATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTAC- 17734 Query 42044 GCGCTTGGCGTGTC--TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTC 42101 ||||| || || || |||||||||||||| ||||||||||| || |||||||| Sbjct 17733 -CGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCG 17675 Query 42102 TGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACC 42161 | | | | | | || | || || || ||||||||||| ||| ||||||| || |||| Sbjct 17674 TAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACC 17615 Query 42162 TTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 |||| | || || |||||||| || || || || || ||||| || || || || Sbjct 17614 TTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 17560 >seq29915 Length=314255 Score = 340 bits (376), Expect = 5e-89 Identities = 420/572 (73%), Gaps = 2/572 (0%) Strand=Plus/Plus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 ||||| || || ||||||||||| || | ||||||||||| | || ||||||| ||| Sbjct 233403 CACTTTTATCCTATTTGGGAAGCGGCATCTATTGATGAATGGTTATATAACGGCGATCCT 233462 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACATGGGACGAGAGTG 41577 | |||| | || | |||||| | |||| || |||| |||||||| || ||||| Sbjct 233463 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TACATGGGGCGTGAGTG 233521 Query 41578 GGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGT 41637 ||||||||| | ||| | || ||| | || ||||| |||||| || || |||||||| Sbjct 233522 GGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGT 233581 Query 41638 CGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGC 41697 || || || |||||||| ||| | | ||||| |||| ||||| ||||| |||| Sbjct 233582 TGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGG 233641 Query 41698 TATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAA 41757 |||||| | || || || || || ||||| | ||| | || || ||||||||||| || Sbjct 233642 TATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAA 233701 Query 41758 TATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTT 41817 ||||||||||||||| ||||||||| | ||||| || || ||||| || || | || Sbjct 233702 TATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 233761 Query 41818 CTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGT 41877 | ||||||||| ||| | |||| || || | || | || || || ||| | | Sbjct 233762 CAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGA 233821 Query 41878 TTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGC 41937 || || | ||||||| ||||||||||||||||| || || |||||||| ||||| Sbjct 233822 ATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGC 233881 Query 41938 TCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCT 41997 ||| || |||||||| || | |||||||||||||| || || || ||||| ||| | | Sbjct 233882 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTT 233941 Query 41998 TCATTTCTTTCTTGCTGCCTGGCCTGTTGTAG 42029 |||||||| | ||||| |||||||| |||| Sbjct 233942 ACATTTCTTCTTAGCTGCTTGGCCTGTAGTAG 233973 >seq32525 Length=219324 Score = 282 bits (312), Expect = 1e-71 Identities = 448/636 (70%), Gaps = 6/636 (1%) Strand=Plus/Plus Query 41213 AGAGAGAATGCCT--GGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTT 41270 |||| ||| |||| ||| | || ||| |||| | ||| || | || ||||||| Sbjct 125540 AGAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTT 125599 Query 41271 ATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTT 41329 | | |||||||| || || | |||||||| | | | ||| |||| || || ||| Sbjct 125600 ACATTGGATGGTTTGGTGTTTTGATGATTCC-TACTTTATTGACCGCAACTTCTGTATTT 125658 Query 41330 ATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCT 41389 |||||||| ||| ||| || || || || || || ||||| || || || || || || Sbjct 125659 ATTATCGCTTTTATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCT 125718 Query 41390 GGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCC 41449 || || || | ||||| ||||| ||||| || || ||| | |||| | | || Sbjct 125719 GGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCT 125778 Query 41450 ATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAAC 41509 || || | ||||| || || ||||||| ||| || | ||||||||||| | |||||| Sbjct 125779 ATAGGTTTGCACTTTTATCCTATTTGGGGAGCGGCATCTGTTGATGAATGGTTATACAAC 125838 Query 41510 GGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACATGGG 41568 |||||||| | |||| | || | |||||| | |||| || |||| |||||||| Sbjct 125839 GGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TACATGGG 125897 Query 41569 ACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTC 41628 || |||||||||||||| | ||| | || ||| | || ||||| |||||| || || Sbjct 125898 GCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTC 125957 Query 41629 TGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTT 41688 |||||||| || || || |||||||| || | | ||||| |||| ||||| || Sbjct 125958 AGCTCCTGTTGCAGCCGCTACTGCTGTTTTTTTGATCTATCCTATTGGTCAGGGAAGCTT 126017 Query 41689 TTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGC 41748 ||| |||| |||||| | || || || | || ||||| | ||| | || || ||||| Sbjct 126018 TTCAGATGGTATGCCTCTAGGAATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGC 126077 Query 41749 TGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGG 41808 | |||| ||||||||||||||||| ||||||||| | ||||| || || ||||| || || Sbjct 126078 TAAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGG 126137 Query 41809 GAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCAC 41844 | ||| ||||||| | ||| | |||| || Sbjct 126138 CTCCCTATTCAGTGCTATGTATGGTTCCTTGGTAAC 126173 >seq6217 Length=83728 Score = 116 bits (128), Expect = 1e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 41645 GCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCC 41704 || |||||||| ||| | | ||||| |||| ||||| ||||| |||| |||||| Sbjct 30540 GCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCT 30599 Query 41705 TTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTT 41764 | || || || | || ||||| | ||| | || || |||||| |||| ||||||||| Sbjct 30600 CTAGGAATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTT 30659 Query 41765 ATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCT 41824 |||||||| ||||||||| | ||||| || || ||||| || || | ||| |||| Sbjct 30660 ATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCT 30719 Query 41825 ATGCACGGT 41833 ||||| ||| Sbjct 30720 ATGCATGGT 30728 >seq20192 Length=443579 Score = 91.5 bits (100), Expect = 4e-14 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 41720 ACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCAC 41779 || ||||| | ||| | || || ||||||||||| ||||||||||||||||| |||||| Sbjct 96325 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 96266 Query 41780 ATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTG 41839 ||| | ||||| || || ||||| || || | ||| ||||||||| ||| | || Sbjct 96265 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 96206 Query 41840 GTCACGTC 41847 || || || Sbjct 96205 GTAACTTC 96198 >seq29178 Length=161839 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| |||||||||||| |||| || | |||||||| | | ||| || |||||| Sbjct 119043 GGTTACATATTTGGTCAAGAGAAAGAAACCAATAATATTGTAGTCGTTCATGGTTATTTT 119102 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || | | || ||||||||||| || || || ||||| ||| | | |||||||| ||| Sbjct 119103 GGCCCATTGATATTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTACTT 119162 >seq646 Length=2337744 Score = 86.0 bits (94), Expect = 2e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 41460 ACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCAT 41519 |||| || || ||||||||||| | | ||||||||||| | |||||||||||||| | Sbjct 1979624 ACTTTTATCCTATTTGGGAAGCGACATCTGTTGATGAATGGTTATACAACGGCGGTCCTT 1979683 Query 41520 TCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACATGGGACGAGAGTGG 41578 |||| | || | |||||| | |||| || |||| |||||||| || |||||| Sbjct 1979684 ATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TACATGGGGCGTGAGTGG 1979742 Query 41579 GAACTTAGCTATCG 41592 |||||||| | ||| Sbjct 1979743 GAACTTAGTTTTCG 1979756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146156807061680