Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq24624 493 4e-135 seq32525 318 2e-82 seq29915 273 6e-69 seq6217 136 1e-27 seq20192 93.3 1e-14 seq27458 84.2 6e-12 >seq24624 Length=74067 Score = 493 bits (546), Expect = 4e-135 Identities = 647/895 (72%), Gaps = 1/895 (0%) Strand=Plus/Minus Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436 |||| |||||| || |||| ||||||||||||| ||||| |||||||| |||||||| | Sbjct 18454 CTGTATTTATTATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGC 18395 Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCA 42496 |||| ||||| ||||| || ||||| ||||| ||||| ||||||||| | | |||| Sbjct 18394 CTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTT 18335 Query 42497 GTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGC 42556 | || || || | || || ||| | || |||||||| | |||| |||||| Sbjct 18334 CTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGT 18275 Query 42557 TCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTT 42616 | || || ||||| |||||| | || | | | |||||| | | ||| | | | Sbjct 18274 TATATAACGGCGGTCCTTATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCT 18215 Query 42617 ACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTG 42676 || |||| || || ||||||||| | || | || ||| | || ||||| ||||| Sbjct 18214 ACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTG 18155 Query 42677 CTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAG 42736 | || || || ||||| || || || ||||| || ||| | ||||||| |||| || | Sbjct 18154 CATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGG 18095 Query 42737 GTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCT 42796 | ||||||||||| |||||||| || ||||| ||||| | ||| || ||| | || | Sbjct 18094 GAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTAT 18035 Query 42797 TCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTAT 42856 | |||||| | ||||| |||||||||||||| || || ||| | | ||| || || |||| Sbjct 18034 TTCAGGCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTAT 17975 Query 42857 TTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTG 42916 | || || || || ||| |||||||||||| | || || ||| | | | | | Sbjct 17974 TCGGCGGCTCCTTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGG 17915 Query 42917 AAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTT 42976 |||| || ||||| ||| ||| | || |||| || ||||||||||| || || | Sbjct 17914 AAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCT 17855 Query 42977 ATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTA 43036 |||| ||||| || || |||||||| ||||| || | |||||||||||||| || | Sbjct 17854 ATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCA 17795 Query 43037 ATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCA 43096 | ||| ||| ||||| || ||||| | || |||||||| || || || |||||||| | Sbjct 17794 ACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTA 17735 Query 43097 CTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCAC 43156 | || | || |||| |||||||| || ||||| |||||||| || || |||||||| Sbjct 17734 CCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCG 17675 Query 43157 TTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACC 43216 | ||||||| ||| || ||| || ||| |||||||||||| | || || || |||| Sbjct 17674 TAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACC 17615 Query 43217 TTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 |||| | || || ||||| || || ||||| ||||| ||||| || ||||| || Sbjct 17614 TTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 17560 >seq32525 Length=219324 Score = 318 bits (352), Expect = 2e-82 Identities = 487/689 (71%), Gaps = 4/689 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | || |||||||| |||| |||||| Sbjct 125554 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTT 125613 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| |||||||||| | | | | || || | ||| |||||| ||||||| || Sbjct 125614 GGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTTAT 125672 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||| || || Sbjct 125673 TGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTA 125732 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| ||||| ||||||||| | | |||| | || || || | || || Sbjct 125733 TGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTT 125792 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 ||| | || |||| ||| | |||| |||||| | ||||| ||||| |||||| | Sbjct 125793 TTATCCTATTTGGGGAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGA 125852 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | |||||| | | ||| | | ||| |||| || || |||||||| Sbjct 125853 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACT 125912 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | || | || ||| | || ||||| |||||| || || || ||||| || || Sbjct 125913 TAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 125972 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || || | ||||||| |||| || || ||||||||||| ||||| Sbjct 125973 CGCTACTGCTGTTTTTTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCC 126032 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || ||||| | ||| ||||| || ||| | || || |||||| | ||||| ||||| Sbjct 126033 TCTAGGAATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCT 126092 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 ||||||||| || || ||| | ||||| || || ||||| || || || | ||| || Sbjct 126093 TATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 126152 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTG-TGCGTGAAACGACTGAAAACGAAAGCC 42937 |||| ||||| |||| | || || ||| | | ||||| || ||||| ||| Sbjct 126153 TATGTATGGT-TCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 126211 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAG 42966 ||| | || |||| || ||||||||| Sbjct 126212 CTAATGAAGGTTACAGATTTGGTCAAGAG 126240 >seq29915 Length=314255 Score = 273 bits (302), Expect = 6e-69 Identities = 402/569 (71%), Gaps = 0/569 (0%) Strand=Plus/Plus Query 42514 CATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCT 42573 || || ||| | || |||||||| | |||| |||||| | || || |||| ||| Sbjct 233403 CACTTTTATCCTATTTGGGAAGCGGCATCTATTGATGAATGGTTATATAACGGCGATCCT 233462 Query 42574 TATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGG 42633 ||| | || | || | |||||| | | ||| | | ||| |||| || || ||| Sbjct 233463 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGG 233522 Query 42634 GAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTG 42693 |||||| | || | || ||| | || ||||| |||||| || || || ||||| Sbjct 233523 GAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 233582 Query 42694 GCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGA 42753 || || || ||||| || ||| | ||||||| |||| || || ||||||||||| Sbjct 233583 GCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGT 233642 Query 42754 ATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAAC 42813 |||||||| || ||||| ||||| ||||| || ||| | || || |||||||| ||||| Sbjct 233643 ATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAAT 233702 Query 42814 ATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTC 42873 |||||||||||||| || || ||| | ||||| || || ||||| || || || | ||| Sbjct 233703 ATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 233762 Query 42874 TCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA 42933 |||||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 233763 AGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 233822 Query 42934 AGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCG 42993 ||| | || |||| || ||||||||||| || || ||||| ||||| || || Sbjct 233823 TCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCT 233882 Query 42994 CATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTG 43053 |||||||| ||||| || | |||||||||||||| || || ||| ||| ||||| Sbjct 233883 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTA 233942 Query 43054 CACTTCTTTCTTGCCGCTTGGCCCGTTGT 43082 || ||||| | || |||||||| || || Sbjct 233943 CATTTCTTCTTAGCTGCTTGGCCTGTAGT 233971 >seq6217 Length=83728 Score = 136 bits (150), Expect = 1e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42694 GCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGA 42753 ||| | || ||||| || ||| | ||||||| |||| || || ||||||||||| Sbjct 30534 GCTCCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGT 30593 Query 42754 ATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAAC 42813 |||||||| || ||||| | ||| ||||| || ||| | || || |||||| | ||||| Sbjct 30594 ATGCCTCTAGGAATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAAT 30653 Query 42814 ATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTC 42873 |||||||||||||| || || ||| | ||||| || || ||||| || || || | ||| Sbjct 30654 ATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 30713 Query 42874 TCAGCTATGCATGGT 42888 |||||||||||| Sbjct 30714 AGTGCTATGCATGGT 30728 >seq20192 Length=443579 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 42773 GTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCC 42832 |||| ||||| || ||| | || || |||||||| ||||| |||||||||||||| || | Sbjct 96327 GTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTC 96268 Query 42833 ATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 | ||| | ||||| || || ||||| || || || | ||| |||||||||||| Sbjct 96267 ACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 96212 >seq27458 Length=239419 Score = 84.2 bits (92), Expect = 6e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 |||||||||||| ||||| ||||||| |||||||| ||||| ||| | ||||| | | Sbjct 96468 TTGCTGCCCCTCTAGTAGATATTGATGCTATTCGTGAGCCTGTTTCTCGATCTCTATTTT 96527 Query 42458 ATGGCAACAACATCATCTCTGGTGCC 42483 |||| ||||| |||| ||||||||| Sbjct 96528 ATGGAAACAATGTCATTTCTGGTGCC 96553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143476263327160