Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq24624 405 2e-108 seq29915 253 6e-63 seq32525 237 5e-58 >seq24624 Length=74067 Score = 405 bits (448), Expect = 2e-108 Identities = 622/881 (71%), Gaps = 6/881 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| || || || || |||||||||||||| || ||||| ||||| | || |||||| Sbjct 17560 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 17619 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 |||||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 17620 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 17679 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| |||| |||||| | || || | | Sbjct 17680 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 17739 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | |||||||| | |||||| || || ||| Sbjct 17740 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 17799 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| ||||||||||| || Sbjct 17800 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 17859 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| | || || | ||| || | | ||||| ||||| Sbjct 17860 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 17919 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||| | | || ||||| || Sbjct 17920 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCCGCCGAATACA 17979 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||| | ||| || ||||| ||||| || |||||||| | || || ||||| Sbjct 17980 CCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACA 18039 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | |||||| || ||||||| || || || |||||||| ||||| ||| || || || Sbjct 18040 ATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 18099 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | |||||| | ||||| || || ||| || | | || |||| |||||||||| Sbjct 18100 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 18159 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC 26535 ||||| || | ||| || | | || |||||||||| | ||| ||| | || Sbjct 18160 GCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCC--CATGTAGC 18217 Query 26536 -TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594 ||||| || | ||||||||| | ||||| |||| ||| || ||||| || |||| || Sbjct 18218 AAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATATAACC 18277 Query 26595 ACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 | || || | | |||| |||||||| || || ||||| || | || || || ||| Sbjct 18278 ATTCATCAACAGATGCC-GCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAA 18336 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | || | | || || || || ||||||||||| || | || || || ||||| ||| Sbjct 18337 GTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 18396 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAA 26754 ||||| || ||||| |||||||| | || || || || || Sbjct 18397 TCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAA 18437 >seq29915 Length=314255 Score = 253 bits (280), Expect = 6e-63 Identities = 403/572 (70%), Gaps = 6/572 (1%) Strand=Plus/Minus Query 26066 ACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATAC 26125 || || ||||||| ||| | |||||||| | |||||| || || ||||| ||||| Sbjct 233971 ACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATAT 233912 Query 26126 TGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCT 26185 || || || |||| ||||| || || || ||||| ||||||||||| || ||||| ||| Sbjct 233911 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCT 233852 Query 26186 TGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAG 26245 || ||||| | || || | ||| || | | ||||| ||||| || | Sbjct 233851 TGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 233792 Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 ||||| ||||| || ||||||||| ||| || | || ||||| || ||||| ||| Sbjct 233791 GAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACA 233732 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||| ||||| || |||||||| || || || ||||| | |||||| Sbjct 233731 CCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAA 233672 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425 || |||||||| || || || |||||||| ||||| ||| || || || || | |||| Sbjct 233671 TTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGA 233612 Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485 || | ||||| || || ||| || | | || |||| |||||||||| ||||| Sbjct 233611 TAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 233552 Query 26486 GGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC-TGCTACTC 26543 || | ||| || | | || |||||||||| | ||| ||| | || ||||| | Sbjct 233551 GGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCC--CATGTAGCAAGCTACAC 233494 Query 26544 CTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCA 26603 | | ||||||||| | | ||| |||| ||| || |||| || |||| ||| || || | Sbjct 233493 CAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAA 233434 Query 26604 GTG-TGCCAGCTTCCCAGATCGGGTAAAAATG 26634 | |||| |||||||| || || ||||| || Sbjct 233433 TAGATGCC-GCTTCCCAAATAGGATAAAAGTG 233403 >seq32525 Length=219324 Score = 237 bits (262), Expect = 5e-58 Identities = 428/617 (69%), Gaps = 8/617 (1%) Strand=Plus/Minus Query 26247 AAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACAC 26306 |||| ||||| || | ||||||| ||| || | || ||||| || ||||| |||| Sbjct 126175 AAGTTACCAAGGAACCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACAC 126116 Query 26307 CAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGT 26366 | ||| || ||||| ||||| || |||||||| | || || ||||| | |||||| | Sbjct 126115 CTAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAAT 126056 Query 26367 TAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGAT 26426 | |||||| | || || || |||||||| ||||| ||| || || || || | ||||| Sbjct 126055 TGAAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGAT 125996 Query 26427 AAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATG 26486 | | || || || || ||| || | | || |||| |||||||||| ||||| | Sbjct 125995 AGATCAAAAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAG 125936 Query 26487 GTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GCT-GCTACTCC 26544 | | ||| || | | || |||||||||| | ||| ||| | || ||||| || Sbjct 125935 GACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCC--CATGTAGCAAGCTACACC 125878 Query 26545 TATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAG 26604 | ||||||||| | | ||| |||| ||| || ||||| ||||||| ||| || || | Sbjct 125877 AAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAAC 125818 Query 26605 TG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGA 26663 | |||| ||| |||| || || ||||| || | || || || ||| | || | | Sbjct 125817 AGATGCC-GCTCCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAA 125759 Query 26664 CTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGC 26723 || || || || ||||||||||| || | || || || ||||| |||||||| || | Sbjct 125758 TGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATAC 125699 Query 26724 CATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCG 26782 |||| |||||||| || || || || || || || | ||||| ||| | ||| || | Sbjct 125698 CATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACA-GAAGTTGCGGTC 125640 Query 26783 AGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTT 26842 | ||| || ||||| | || || |||||||| | || ||||| || || || || Sbjct 125639 AATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTGCTG 125580 Query 26843 GTAACCCACTCACAAAA 26859 || | ||| | ||| || Sbjct 125579 GTTATCCAGTTACAGAA 125563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147653817166400