Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq24624 376 7e-100 seq32525 259 1e-64 seq29915 214 5e-51 seq6217 86.0 2e-12 >seq24624 Length=74067 Score = 376 bits (416), Expect = 7e-100 Identities = 620/892 (70%), Gaps = 2/892 (0%) Strand=Plus/Plus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| |||||||| || || ||||| ||||| || ||||||||||||||||| || | Sbjct 17559 AGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTT 17618 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 || ||||| || ||||||||| ||| ||| || ||| | | || ||||| || Sbjct 17619 AGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGA 17678 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 ||||| || || |||||||| | ||| ||||||||||| ||||| | | ||||| Sbjct 17679 TTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAA 17738 Query 40712 CCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAA 40771 ||| || || | || || ||||| | | ||||| |||| | ||| ||||||||| Sbjct 17739 CCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 17798 Query 40772 TGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGT 40831 |||||||| || || | || ||||| ||||| || |||||||| || ||||| || Sbjct 17799 ACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGT 17858 Query 40832 CTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCG 40891 || | || |||||||| | || || | || |||||| |||| ||||| |||| Sbjct 17859 TTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 17918 Query 40892 AATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGAC 40951 || | ||||| || | | || ||||||||| || || | || || || || Sbjct 17919 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCCGCCGAATAC 17978 Query 40952 GCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGAC 41011 || || || | | ||| || ||||| ||||| ||||| || || | || || || || Sbjct 17979 ACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATAC 18038 Query 41012 AAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTG 41071 || ||| || ||| | || || ||||||| |||||||||||| || || ||||| Sbjct 18039 AATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTG 18098 Query 41072 ACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCAC 41131 ||| | ||||| | ||||| ||||| ||| |||| | ||||||| ||||| || Sbjct 18099 ACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAAC 18158 Query 41132 AAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGC 41191 | ||||| || | |||||| | | | ||||||||||| | || ||| Sbjct 18159 AGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCA 18218 Query 41192 TGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCA 41251 ||||| || | ||| ||||| | | ||| |||| ||| || |||||||| |||| ||| Sbjct 18219 AGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATATAACCA 18278 Query 41252 CTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGC 41310 || || | | |||| |||||||| || || || || || | || || || ||| Sbjct 18279 TTCATCAACAGATGCC-GCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAG 18337 Query 41311 TCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCT 41370 | |||| | || ||||| || |||||||| || || | || || || ||||| |||| Sbjct 18338 TAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCT 18397 Query 41371 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 |||| || ||||| |||||||| | || || || ||||| | ||| || || Sbjct 18398 CACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATAATAAA 18449 >seq32525 Length=219324 Score = 259 bits (286), Expect = 1e-64 Identities = 450/649 (69%), Gaps = 4/649 (1%) Strand=Plus/Minus Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCA 40928 |||||| |||| ||||| |||| || | |||| || | | || | ||||||| Sbjct 126209 GATTCATTTTCTGTGGTTTCCCTGATCAAACTAAAAGTTACCAAGGAACCATACATAGCA 126150 Query 40929 GCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGA 40988 || | | || || || || || || || || | ||| || ||||| ||||| ||| Sbjct 126149 CTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGA 126090 Query 40989 ATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGC 41048 || || || | || || || |||| ||| || ||||| || | ||||||| |||| Sbjct 126089 ATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAAATTCCTAGAGGC 126030 Query 41049 ATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCT 41108 |||||||| || || |||||||| | ||||| | || || ||||| ||| ||| Sbjct 126029 ATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAAAAAACAGCAGTAGCGGCT 125970 Query 41109 GACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGT 41168 | | ||||||| ||||| ||| ||||| || | |||||| | | | |||| Sbjct 125969 GCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGT 125910 Query 41169 TCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGA 41228 ||||||| | || ||| ||||| || | ||| ||||| | ||||| |||| | Sbjct 125909 TCCCACTCACGCCCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCA 125850 Query 41229 TATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAA 41287 || || ||||||||||||| ||| || || | | ||||| || |||| || || || || Sbjct 125849 TAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCG-CTCCCCAAATAGGATAAAA 125791 Query 41288 ATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTA 41347 || | || || || ||| | |||| | || ||||| || |||||||| || || Sbjct 125790 GTGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATA 125731 Query 41348 CATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGAT 41407 | || || || ||||| |||||||| || ||||| |||||||| || || || || || Sbjct 125730 AAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCAAT 125671 Query 41408 AAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAA 41466 ||| ||||| || || ||| | || || || | ||| | |||||||| | ||||||| Sbjct 125670 AAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAA 125612 Query 41467 ACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||| || | ||| || || || |||||||| || | ||||||||| || Sbjct 125611 ACCATCCAATGTAAAGACGATTTTCGGTGCTGGTTATCCAGTTACAGAA 125563 >seq29915 Length=314255 Score = 214 bits (236), Expect = 5e-51 Identities = 385/560 (69%), Gaps = 2/560 (0%) Strand=Plus/Minus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||||| | | ||||| |||| | ||| ||||||||| |||||||| || || | Sbjct 233961 AAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATATTGGAAGATCA 233902 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| || |||||||| || ||||| || || | || |||||||| Sbjct 233901 ATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGACCAAATC 233842 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAA 40911 | || || | || |||||| |||| ||||| |||| || | ||||| || | Sbjct 233841 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCA 233782 Query 40912 GGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATAT 40971 | || ||||||||| || | | || || || || || || || || | ||| | Sbjct 233781 AGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGT 233722 Query 40972 GGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTC 41031 | ||||| ||||| ||||| || || || || || || |||| ||| || ||||| || | Sbjct 233721 GAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTAC 233662 Query 41032 CACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGA 41091 | ||||||| |||||||||||| || || |||||||| | ||||| | |||| Sbjct 233661 CTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGA 233602 Query 41092 ATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATAC 41151 | ||||| ||| |||| | ||||||| ||||| ||| ||||| || | ||||| Sbjct 233601 AAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATAC 233542 Query 41152 CTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGT 41211 | | | | ||||||||||| | || ||| ||||| || | ||| |||| Sbjct 233541 CCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACACCAAGTAAGAAGT 233482 Query 41212 GAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCT 41270 | | ||||| |||| ||| || ||||||| |||| ||| || || | | |||| ||| Sbjct 233481 GTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAATAGATGCC-GCT 233423 Query 41271 TCCCAGATTGGGTAGAAATG 41290 ||||| || || || || || Sbjct 233422 TCCCAAATAGGATAAAAGTG 233403 >seq6217 Length=83728 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| || | | || || || || || || || || | ||| || ||| Sbjct 30727 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 30668 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 || ||||| ||||| || || | || || || |||| ||| || ||||| || | Sbjct 30667 GGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAA 30608 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||| |||||||||||| || || |||||||| | ||||| | ||||| ||| Sbjct 30607 ATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAACA 30548 Query 41097 GC 41098 || Sbjct 30547 GC 30546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143645796522780