Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq24624 482 3e-131 seq29915 336 2e-87 seq32525 315 8e-81 seq6217 134 2e-26 seq20192 104 3e-17 >seq24624 Length=74067 Score = 482 bits (534), Expect = 3e-131 Identities = 638/884 (72%), Gaps = 6/884 (1%) Strand=Plus/Plus Query 67359 GCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGT 67418 ||||| || || |||||||| || ||||| ||||| || ||||| |||||||| ||||| Sbjct 17557 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGG 17616 Query 67419 CCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACG 67475 |||| ||||| || || ||||| ||| ||| || || |||| ||||| Sbjct 17617 TTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAACT 17673 Query 67476 ACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCA 67535 |||||||||||||| |||||||| || | |||||| |||||||| | ||| | || Sbjct 17674 ACGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCG 17733 Query 67536 GTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTG 67595 || ||||| || | || ||||| | ||||| | |||||| || | | | || ||| Sbjct 17734 GTAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTG 17793 Query 67596 TTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTG 67655 |||||| |||||| ||||||||||| || || || || ||||||||||| ||||| || Sbjct 17794 TTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTA 17853 Query 67656 TAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTT 67715 || || ||||| ||||| || || ||||||| | || || || | || || ||| Sbjct 17854 TAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTT 17913 Query 67716 TCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCG 67775 || ||||| | | |||||| || | ||||| ||||||||||| || | || || ||| Sbjct 17914 TCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAAGGAGCCGCCG 17973 Query 67776 AATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGG 67835 |||||||| ||||| | | ||| || ||||| |||||||| || || |||| || || Sbjct 17974 AATACACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGA 18033 Query 67836 AACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAA 67895 || || | ||| | || ||||||| ||||| || |||||||| | || || || Sbjct 18034 AATACAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTT 18093 Query 67896 CCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTAT 67955 || ||||| | |||||||| |||||| ||||| || || | || ||||| || ||| Sbjct 18094 CCCTGACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATAT 18153 Query 67956 GCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAG 68015 || ||| ||||||||||||||||| | ||| || ||||||||||| ||| || | Sbjct 18154 GCAACAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATG 18213 Query 68016 TATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATAC 68075 || | | || | | |||||| | | | |||| |||| || || ||||| Sbjct 18214 TAGCAAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATAT 18273 Query 68076 AACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTT 68135 ||||| ||||| | || ||| |||||||| |||||||| ||||| | ||| || || Sbjct 18274 AACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCA 18333 Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 ||| |||||| || |||||||||||||| ||||| || || | || || || | |||| Sbjct 18334 GAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 18393 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAA 68239 || || | |||||||| ||||| ||| |||| || ||||| || Sbjct 18394 GGCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAA 18437 >seq29915 Length=314255 Score = 336 bits (372), Expect = 2e-87 Identities = 440/609 (72%), Gaps = 0/609 (0%) Strand=Plus/Minus Query 67551 ACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATAC 67610 || ||||| | ||||| | |||||| || | | | || ||||||||| |||||| Sbjct 233971 ACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATAT 233912 Query 67611 TGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670 ||||||||||| || || || || ||||||||||| ||||| || || || ||||| ||| Sbjct 233911 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCT 233852 Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730 || || || ||||||| | || || || | || || ||||| ||||| | | | Sbjct 233851 TGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 233792 Query 67731 GAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACT 67790 ||||| || | ||||| ||||||||||| || || || || ||||||||||| ||||| Sbjct 233791 GAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACA 233732 Query 67791 CCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAG 67850 || | ||| || ||||| |||||||| || || ||||| || || || || | ||| | Sbjct 233731 CCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAA 233672 Query 67851 TTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGA 67910 || |||||||| ||||| || |||||||| | || || || || ||||| | |||| Sbjct 233671 TTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGA 233612 Query 67911 TAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAA 67970 |||| |||||| ||||| || || | || ||||| || ||||| ||| |||||| Sbjct 233611 TAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 233552 Query 67971 GGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCG 68030 ||||||||||| | ||| || ||||||||||| ||| || ||| | | || Sbjct 233551 GGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACACCA 233492 Query 68031 ATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGA 68090 | | |||||| | || | |||| |||| | || ||||| ||||| ||||| | | Sbjct 233491 AGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAATA 233432 Query 68091 GTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACA 68150 | ||| |||||||| |||||||| ||||| | ||| || || ||| |||||| || Sbjct 233431 GATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAATG 233372 Query 68151 GCACCAGAA 68159 ||||||||| Sbjct 233371 GCACCAGAA 233363 >seq32525 Length=219324 Score = 315 bits (348), Expect = 8e-81 Identities = 474/674 (70%), Gaps = 0/674 (0%) Strand=Plus/Minus Query 67668 TCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGA 67727 ||||| || || ||||||| | || || || | || || ||||| ||||| | | Sbjct 126239 TCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 126180 Query 67728 GAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCT 67787 | |||| || | ||||| | ||||||||| || || || || ||||||||||| ||| Sbjct 126179 CTAAAAGTTACCAAGGAACCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCT 126120 Query 67788 ACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATG 67847 || || | ||| || ||||| |||||||| || || |||| || || || || | ||| Sbjct 126119 ACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATA 126060 Query 67848 TAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAA 67907 | || |||||| | ||||| || |||||||| | || || || || ||||| | | Sbjct 126059 AAATTGAAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATA 126000 Query 67908 GGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATC 67967 ||||||| ||| || ||||| || || | || ||||| || ||||| ||| ||| Sbjct 125999 GGATAGATCAAAAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATC 125940 Query 67968 CAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATT 68027 |||||||||||||| | ||| || ||||||||||| ||| || ||| | | Sbjct 125939 CAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACA 125880 Query 68028 CCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCT 68087 || | | |||||| | || | |||| |||| || || || || ||||| ||||| Sbjct 125879 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCA 125820 Query 68088 AGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACA 68147 | || ||| ||| |||| |||||||| ||||| | ||| || || ||| |||||| | Sbjct 125819 ACAGATGCCGCTCCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATA 125760 Query 68148 ACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATA 68207 | |||||||||||||| ||||| || || | || || || | |||||| || | ||| Sbjct 125759 ATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATA 125700 Query 68208 CCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCG 68267 ||||| ||||| |||||||| || ||||| || || || || || || | ||| | Sbjct 125699 CCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACAGAAGTTGCGGTC 125640 Query 68268 AGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCAACTGAG 68327 | || |||||||||||| ||||| ||||| |||| || | ||||| || | Sbjct 125639 AATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCGGTGCTG 125580 Query 68328 GTGACCCAGTTACA 68341 || | ||||||||| Sbjct 125579 GTTATCCAGTTACA 125566 >seq6217 Length=83728 Score = 134 bits (148), Expect = 2e-26 Identities = 190/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 67668 TCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGA 67727 ||||| || || ||||||| | || || || | || || ||||| ||||| | | Sbjct 30811 TCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 30752 Query 67728 GAAGAAGTAAC-AAG-----AGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACA 67781 | |||| || ||| | |||| ||||||||||| || || || || ||||||||| Sbjct 30751 CTAAAAGTTACCAAGGAACCATAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 30692 Query 67782 CCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACG 67841 || ||||| || | ||| || ||||| |||||||| || || |||| || || || || Sbjct 30691 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACA 30632 Query 67842 AACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGA 67901 | ||| | || |||||| | ||||| || |||||||| | || || || || ||| Sbjct 30631 ATCATAAAATTGAAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 30572 Query 67902 CCGAAAGGATAGACCAAGAACACAGC 67927 || | |||||||| |||||| ||||| Sbjct 30571 CCAATAGGATAGATCAAGAAAACAGC 30546 >seq20192 Length=443579 Score = 104 bits (114), Expect = 3e-17 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 67714 TTTCT--CTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACC 67771 ||||| ||||| | | |||||| || | ||||| ||||||||||| || || || || Sbjct 96179 TTTCTAACTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCC 96238 Query 67772 ACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGC 67831 ||||||||||| ||||| || | ||| || ||||| |||||||| || || ||||| || Sbjct 96239 GCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGC 96298 Query 67832 TTGGAACACGAACATGTAGTTAAAAGTAC 67860 || || || | ||| | || ||||||| Sbjct 96299 CTGAAATACAATCATAAAATTGAAAGTAC 96327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566712129517200