Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq15063 190 1e-43 seq9007 125 5e-24 >seq15063 Length=3774 Score = 190 bits (210), Expect = 1e-43 Identities = 310/443 (70%), Gaps = 9/443 (2%) Strand=Plus/Plus Query 10919 TATTCAGTATTTAACCAAACAAAAAACGACCAACTGAAGGAGCCGATGTTCTTCGGCCAA 10978 ||||| | ||| |||||| ||||| |||| | || ||||||||||| || || || Sbjct 2117 TATTCCATCTTTTGCCAAACCAAAAATGACCCATTGCTTGAGCCGATGTTTTTTGGTCAG 2176 Query 10979 TCAGTTAACGTATCCCGTTACGACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAG 11038 | || || || | |||||||||||||| ||| |||||| ||| | | | | | Sbjct 2177 CCTGTCAATGTGGCACGTTACGACCAACAAAAATTCCCTGTTTTCGAGCAGTTGATTGAA 2236 Query 11039 AAGCAACTATCATTCTTCTGGCGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGAC 11098 |||||| | || || || |||||||| |||||| |||| || || ||||||| | || Sbjct 2237 AAGCAATTGTCGTTTTTTTGGCGTCCAGAAGAAATTGACGTTTCCAAAGACCGTTTGGAT 2296 Query 11099 TACAGTAAAATGACTGATGC-GGAGAAACACATCTTCATTAGTAACCTGAAGTACCAAAC 11157 | || || || | | ||| || | || |||||| | |||||||| ||||||||||| Sbjct 2297 TTTAGCAACTTGTCAG-TGCATGAACAGCATATCTTCTTAAGTAACCTAAAGTACCAAAC 2355 Query 11158 ATTACTCGACTCGATCCAAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACT 11217 || || || ||||| ||||| |||||||| | ||| ||| ||| || || | Sbjct 2356 CTTGCTTGATTCGATTCAAGGTCGTAGCCCCA--ATGCCGT-----GCTACTGCCTCGAT 2408 Query 11218 ACCAGAAGTCGAAACTTGGGTAGAAACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTC 11277 || || | ||||| ||| | ||||| ||| || || |||||||| |||||| Sbjct 2409 TCCTGAGTTAGAAACCTGGATTGAAACTTGGTCATTTTCTGAGACCATCCATTCTCGTAG 2468 Query 11278 ATACACACACATCATTCGCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGT 11337 || || || || ||||| || | ||||||||||| || | || ||||||||| | || Sbjct 2469 CTATACCCATATTATTCGTAACGTGGTCAATGACCCAAGCAAAGTATTCGATGATATCGT 2528 Query 11338 TGAGAATAAGCACATCCTAGAGC 11360 ||| ||| |||||||||| Sbjct 2529 TGACAATCCTTTTATCCTAGAGC 2551 Score = 131 bits (144), Expect = 1e-25 Identities = 315/473 (67%), Gaps = 9/473 (2%) Strand=Plus/Plus Query 11516 TTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGTAATGCTAAAATCATC 11575 || |||||||||||||| || ||||| ||| | | |||||||||||||| ||||||||| Sbjct 2725 TTTGCTTGTTCATTTGCCTTTGCTGAGCGCAAACTGATGGAAGGTAATGCCAAAATCATC 2784 Query 11576 AAGCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAGCACATGCTGAAGATG 11635 || | ||||| ||||| ||||| || || | || ||| || ||||| ||| | || || Sbjct 2785 AAAATGATTGCCCGTGACGAAGCGCTTCATCTAAACGGCACCCAGCATATGATTAATTTG 2844 Query 11636 TGGAACAACGGCACCGATGATATGGAAATGGCTTCTATCGCACATGAGTGTCGCGAAGAG 11695 | | || | ||||| || |||| ||||| || || || | | | Sbjct 2845 ATGCAATCGGGTAAAGATGACCCTGACATGGTCGAAATCGCCCAAGATTGCCAACAGCAA 2904 Query 11696 TCAATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAAGACTGGGCAAACTATCTATTC 11755 | || ||||| ||||| || | |||||||| |||| |||||||| || | || Sbjct 2905 GCCATTGAAATTTTCAAAGACGCGGCTGAACAAGAAAAAGCATGGGCAAAATACTTGTTT 2964 Query 11756 AAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTATGTG-AATATGTTGAGTACAT 11814 |||||||| ||||| || | || || ||| ||| ||| ||||||| |||||||| Sbjct 2965 AAAGATGGCTCAATGATTGGCTTGAATGAAAATA-TCTTGGTGCAATATGTCGAGTACAT 3023 Query 11815 CACAAGCCACCGAATGAAGTATGTCGGGCTACCTCCGCTACACCCGGAAGCAACTAACCC 11874 || | | || ||| | | || |||| ||| || || || ||||| Sbjct 3024 TACCAATCTACGCATGGATGCGATTGGCTTACCGCCGATA-----TTAA--AAACAACCC 3076 Query 11875 AATCCCATGGATCAACAACTGGTTGGTTAGTGATAATGTTCAAGTTGCTCCACAGGAAGC 11934 ||| |||||||| || |||||| || || || ||||| || || || || | Sbjct 3077 AATTCCATGGATTAATGCTTGGTTGTCCTCAGACAACGTGCAAGTCGCGCCCCAAGAGTC 3136 Query 11935 CGAGATTAGTTCATACCTAACCGCACAAGTTGACTCGGACATCAGTGATGATG 11987 || || | || ||| || || ||| ||||| | || ||||||| |||| Sbjct 3137 AGAAATCACCTCTTACTTAGTCGGTCAAATTGACGCAGAGCTCAGTGACGATG 3189 >seq9007 Length=2901 Score = 125 bits (138), Expect = 5e-24 Identities = 264/394 (67%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 10460 GGCCTACGTAACTCTACTCTATCTGCATTCATGCCTTCGGAAACATCTTCTCAGGTATCT 10519 || || || ||||| || | | || || ||||| || ||||| ||| || | || Sbjct 2185 GGTCTTCGCAACTCAACCTTGACCGCCTTGATGCCATCAGAAACCTCTAGCCAAATTGCT 2126 Query 10520 AACGCAACAAACGGCATCGAACCACCTCGTGGCTACATGTCAGTTAAGCAGTCGAAGGAT 10579 |||||||| || ||||| || ||||||||||| | || || || ||| || || Sbjct 2125 AACGCAACTAATGGCATTGAGCCACCTCGTGGTCTGGTATCTGTGAAAGCGTCAAAAGAC 2066 Query 10580 GGCATCTTAAAACAAATCGTACCGGGTTATGATAAATACAAAGACCAATACGAGTTACTA 10639 || || ||||||||| | || || | |||||| |||||| ||||||||| || || Sbjct 2065 GGTATTTTAAAACAAGTGGTGCCTGAGATTGATAAGCTCAAAGATCAATACGAGCTATTA 2006 Query 10640 TGGAATATCAAAGACAACACTGGTTACTTGGAATTGGTTGCCATCATGCAGAAGTTTGTG 10699 ||| | || | | |||| ||||| ||| | || || || ||||| || || | Sbjct 2005 TGGCAAATGCCAAATAACAAAGGTTATTTGAGTCTTGTGGCAATTATGCAAAAATTCATT 1946 Query 10700 GATCAGGCTATTTCAGCAAACACTAACTACGACCCAGAAAACTACCCAGAAAGTAAGGTT 10759 || || ||| ||| | || || |||||||||||| || | ||| || ||| Sbjct 1945 GACCAAAGTATCTCAACCAATACCAACTACGACCCAACCAAGTTTGAAGATAGCCGTGTT 1886 Query 10760 CCAATCAAAAAGTTATTGCAAGATTTGGTGACATGTTATAGACTCGGCATCAAGACACTG 10819 || || || | | | ||||| ||| ||| |||| | | || | ||||| ||| Sbjct 1885 CCGATGAAGGTGATGATTCAAGACTTGTTGATGGCGTATAAATTAGGTGTTAAGACGCTG 1826 Query 10820 TACTACCACAACACACGAGATGGTGCTAGTGATG 10853 ||||| || ||||| || ||||| || | ||||| Sbjct 1825 TACTATCATAACACCCGTGATGGCGCAAATGATG 1792 Score = 114 bits (126), Expect = 9e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 9839 ATGCAAGAGCGTGCTTCTACAGGTCGCATCTACATTCAGCACGTAGATCACTGTAACATT 9898 |||||||||||||| |||||||| ||||| | || |||| || || || |||| Sbjct 2818 ATGCAAGAGCGTGCCAGCACAGGTCGTATCTATGTGCAAAACGTTGACCATTGCAACACC 2759 Query 9899 AACGGTCCTTTCGATGAGCGCGTTGCACCAGTACGCCAATCAAACCTATGTATGGAAATC 9958 || |||| || || | || || ||| | |||||||| |||||||||||||||||| Sbjct 2758 CACAGTCCGTTTGACCCAAGTGTCGCGCCAATTCGCCAATCCAACCTATGTATGGAAATC 2699 Query 9959 GCACTACCAACCAAACCGTTGAATAACGTCGATGATCCTGATGGTGAAGTTGCGCTATGT 10018 || ||||| ||| ||||| | | ||| || ||||| |||||| | || || ||| Sbjct 2698 GCGCTACCGACCCAACCGCTTGACAACATCAATGATGAAAGCGGTGAAATCGCCCTTTGT 2639 Query 10019 ACTCTATC-TGCATTCAACTTGGGT 10042 || |||| ||||| ||||||||| Sbjct 2638 ACGTTATCAGGCATT-AACTTGGGT 2615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342834150030230