Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7180 122 2e-22 seq646 105 1e-17 seq3517 104 4e-17 seq32646 91.5 3e-13 >seq7180 Length=1421306 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||||| || | ||||| ||||| || |||| | ||||| Sbjct 1039039 CGAAGCACCAAATGCAGAGTCGATTCTTTCTGGATATTGTAATCGGCGAGGGTTCTGCCG 1038980 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| || || || | || ||||| ||||| || ||||| ||| Sbjct 1038979 TCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGATCCGGAGGAATCCCTTCCTTA 1038920 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||| | || || || ||||| ||||| || ||||| || || Sbjct 1038919 TCTTGAATCTTGGCTTTCACGTTATCGATTGTGTCGGAGGACTCCACCTCTAGCGTGATT 1038860 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| ||||| || || |||||||| Sbjct 1038859 GTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 1038825 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| | ||||| || || | ||||||||||| || || || | | Sbjct 1038778 ATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAAACGC 1038719 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| || || || || ||||| ||||||| || | || || || Sbjct 1038718 TGTTGATCCGGAGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTCACGTTGTCGATGGTG 1038659 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || ||||| || || | || || || || || ||||| ||||| || || || ||| Sbjct 1038658 TCAGAGGACTCCACCTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGC 1038599 Query 193359 ATTTT 193363 || || Sbjct 1038598 ATATT 1038594 >seq646 Length=2337744 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193145 TCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGA 193204 |||||| |||||||| | || | ||||| |||||| || |||| | ||||| Sbjct 1860374 TCGAAGCACCAGATGAAGCGTCGATTCTTTCTGAATATTGTAATCGGCGAGGGTTCTGCC 1860315 Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 || || | ||||||||||| || || || | ||| || || || || || ||||| || Sbjct 1860314 GTCTTCGAGCTGTTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGAATGCCTTCCTT 1860255 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | ||| | || || || || || ||||| || ||||| || || Sbjct 1860254 GTCCTGGATCTTAGCTTTCACGTTATCGATGGTGTCAGAGGACTCGACCTCTAGCGTAAT 1860195 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| ||||| ||||| || || |||||||| Sbjct 1860194 CGTTTTACCGGTTAGGGTTTTGACGAAGATTTGCAT 1860159 >seq3517 Length=1029689 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| ||||| |||| || | || | || || ||| || || || Sbjct 702038 ATACCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCA 701979 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| ||| || | |||||| ||||||||||| | ||||| ||||| || Sbjct 701978 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGG 701919 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| || || || |||| || | ||| ||| || || || || || Sbjct 701918 GGGATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCC 701859 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || | || || ||||| |||||||| Sbjct 701858 ACCTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 701809 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| ||||| |||| || | || | || || ||| || || || Sbjct 706439 ATACCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCA 706380 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| ||| || | |||||| ||||||||||| | ||||| ||||| || Sbjct 706379 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGG 706320 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| || || || |||| || | ||| ||| || || || || || Sbjct 706319 GGGATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCC 706260 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || | || || ||||| |||||||| Sbjct 706259 ACCTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 706210 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||||| || | || || |||||| || || | Sbjct 707121 ACCACCACGAAGGCGGAGGACAAGATGCAGGGTGGATTCCTTCTGAATATTGTAATCCGC 707062 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | | ||| || ||||| || || |||||||| | ||||| ||||| || || Sbjct 707061 CAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGG 707002 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || || || || || || | ||| | ||| ||| ||||| || || || Sbjct 707001 AATACCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTATCAGAGCTTTCCAC 706942 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||||| || || ||||| || || || |||||||||||||| Sbjct 706941 CTCCAAGGTTATGGTCTTCCCTGTCAGAGTCTTCACAAATATTTGCAT 706894 >seq32646 Length=539585 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||||| ||||||| || | || || |||||| || || | || || | | | Sbjct 528835 CGAAGTGGAAGATGCATGGTGGATTCCTTCTGAATATTGTAATCTGCCAAGGTACGACCA 528894 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||||||| | || |||||||| | || || ||||| ||||| || || || || Sbjct 528895 TCTTCTAATTGCCTCCCAGCAAAAATGAGCCTTTGCTGATCTGGAGGGATACCCTCCTTG 528954 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | ||| ||||||||| || || || || | || || Sbjct 528955 TCCTGAATCTTAGCTTTCACATTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATG 529014 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || |||||||||||||| Sbjct 529015 GTCTTCCCTGTCAGAGTCTTCACAAATATTTGCAT 529049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899281380794400