Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq21071 122 1e-22 seq646 109 8e-19 seq3517 100 4e-16 seq32646 95.1 2e-14 seq25741 87.8 3e-12 >seq21071 Length=2748687 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || ||||| |||||||| || || |||||||| ||| |||| Sbjct 2708701 ATGCAAATCTTTGTTAAGACTTTGACCGGAAAAACAATAACTTTAGAAGTTGAAAGTTCT 2708642 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||||| || ||||| || ||||| || || || ||||| || Sbjct 2708641 GATACCATCGATAACGTGAAGGCAAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 2708582 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || |||||||| |||||| | ||| | | ||||||||| Sbjct 2708581 CAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACTCTTGCTGATTATAAT 2708522 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || || ||| | || || ||||| ||||| || Sbjct 2708521 ATCCAGAAGGAGTCCACTCTGCATTTGGTGTTGAG 2708487 >seq646 Length=2337744 Score = 109 bits (120), Expect = 8e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || ||||| ||||| |||| ||||| ||| Sbjct 1860159 ATGCAAATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTCCTCT 1860218 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| ||| || || || || |||||||| || ||||| || Sbjct 1860219 GACACCATCGATAACGTGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCACCAGACCAG 1860278 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||||| || ||||||||||| |||||| | | ||||| ||| Sbjct 1860279 CAGCGCTTGATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGATTACAAT 1860338 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| ||||||||||| | ||| Sbjct 1860339 ATTCAGAAAGAATCGACGCTTCATCTGGTG 1860368 >seq3517 Length=1029689 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || |||||||||||||| || || || || || ||| ||| Sbjct 706666 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAAACCATAACTTTGGAGGTTGAAAGCTCT 706725 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| || ||||| || || ||||| || || ||||| || Sbjct 706726 GACACCATCGATAATGTGAAGGCAAAGATACAGGACAAGGAAGGTATTCCACCAGACCAG 706785 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || |||||||| |||||| | || | | ||||||||| Sbjct 706786 CAGAGGCTTATTTTTGCAGGGAAGCAGCTGGAAGATGGGCGTACCCTGGCTGATTATAAT 706845 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || || || | || || ||||| ||||| || Sbjct 706846 ATCCAGAAGGAATCCACTCTGCATTTGGTGTTGAG 706880 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || |||||||||||||| || || || || || ||| |||| Sbjct 702265 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAAACCATAACTTTGGAGGTTGAAAGTTCT 702324 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || || || || || ||||| || || || || Sbjct 702325 GATACCATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAG 702384 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || ||||| || |||||| | || || ||||||| ||| Sbjct 702385 CAGAGGCTTATTTTTGCTGGGAAGCAACTGGAAGATGGTCGTACCTTGGCAGATTACAAT 702444 Query 156003 AT 156004 || Sbjct 702445 AT 702446 >seq32646 Length=539585 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || |||| || || || ||||| || || || ||| ||| Sbjct 529049 ATGCAAATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 528990 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| ||| || || || || || || || |||||||| || Sbjct 528989 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCTCCAGATCAG 528930 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || | ||| | |||||| | || || ||||||| ||| Sbjct 528929 CAAAGGCTCATTTTTGCTGGGAGGCAATTAGAAGATGGTCGTACCTTGGCAGATTACAAT 528870 Query 156003 AT 156004 || Sbjct 528869 AT 528868 >seq25741 Length=849835 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| || ||||| | || || || |||| Sbjct 274122 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACAATTACCCTTGAGGTGGAGAGTTCT 274181 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| ||||| || || || || || ||| Sbjct 274182 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCCGACCAA 274241 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || |||||||| || ||| | | || | | ||||| || Sbjct 274242 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCCGATTACAAC 274301 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| |||| || || Sbjct 274302 ATTCAGAAAGAGTCGACCCTCCA 274324 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| || ||||| | || || || |||| Sbjct 296864 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACAATTACCCTTGAGGTGGAGAGTTCT 296805 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| ||||| || || || || || ||| Sbjct 296804 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCCGACCAA 296745 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||| | ||| || |||||||| || ||| Sbjct 296744 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGAT 296709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731568547572000