Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq21071 118 2e-21 seq3517 114 3e-20 seq25741 107 4e-18 seq21796 89.7 1e-12 >seq21071 Length=2748687 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || || ||||| |||| ||| || ||||| |||||| Sbjct 2708928 ATGCCACCTCTTAAACGAAGAACCAAGTGTAAGGTAGACTCCTTCTGAATATTGTAATCA 2708987 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||||||||||||||| || || ||||| ||||| || Sbjct 2708988 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAATATCAACCTCTGCTGATCTGGA 2709047 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || |||||| || | || || ||||| Sbjct 2709048 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGATTCG 2709107 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| || || || | ||| || ||||| Sbjct 2709108 ACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 2709157 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| | || || ||||| | ||| | ||| || ||||||||||||| Sbjct 2708472 ATACCTCCACGAAGCCTCAACACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCA 2708531 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || || ||||||||||| | ||||| || || ||| Sbjct 2708532 GCAAGAGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGT 2708591 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || ||||| || || || ||| || | ||| || ||| Sbjct 2708592 GGAATCCCCTCTTTGTCCTGTATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCA 2708651 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || ||||| || || || || |||| ||| || ||||| Sbjct 2708652 ACTTCTAAAGTTATTGTTTTTCCGGTCAAAGTCTTAACAAAGATTTGCAT 2708701 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||| ||||| | || || ||||| ||||| | Sbjct 2708246 ACCACCACGAAGGCGAAGGACAAGATGCAAAGTGGATTCCTTCTGAATATTGTAATCTGC 2708305 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||||||| || |||||||| || | ||||| ||||| || || Sbjct 2708306 CAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGAGG 2708365 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || || ||| ||| ||||| |||| ||| || ||| || Sbjct 2708366 GATACCTTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATAGTATCAGAGCTTTCCAC 2708425 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | |||||||| || || || | || || | |||||||||||| Sbjct 2708426 CTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 2708473 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | || || || || | |||| || || ||| |||||||| Sbjct 2708700 ATGCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCT 2708759 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||||||||||||||| | ||||| || || || Sbjct 2708760 GCAAGGGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGG 2708819 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || ||| ||||| ||| | |||||| || Sbjct 2708820 GGGATACCCTCCTTATCTTGAATCTTGGCTTTCACATTGTCTATGGTATCTGAACTCTCC 2708879 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || || || || || | || |||||||| Sbjct 2708880 ACCTCCAAGGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 2708929 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 192373 GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATT 192432 |||| | |||| || | |||||| || |||||||| | ||||| ||||||||||| || Sbjct 2704545 GTTCTTCCATCTTCAAGTTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCAGGTGGGATC 2704604 Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 ||||| || |||| || ||| ||| || || || || || || || || || Sbjct 2704605 CCTTCCTTTTCTTCAATCTTAGCTTTCACGTTTTCGATGCTGTCAGAAGACTCCACCTCA 2704664 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || ||||| | ||| |||||||| Sbjct 2704665 AGGGTGATAGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 2704708 >seq3517 Length=1029689 Score = 114 bits (126), Expect = 3e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||||| | || || |||| || | ||||||||| |||||||| | ||| Sbjct 701763 GATGTTGTAATCAGCAAGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCT 701704 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || ||||| || ||||| || ||| |||||| || || | Sbjct 701703 CTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTTACGTTGTCAATGGT 701644 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| || || || || ||||| || || || || ||||| | |||||||| Sbjct 701643 GTCGGAGGATTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTTACGAATATCTG 701584 Query 192534 CAT 192536 ||| Sbjct 701583 CAT 701581 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | || || |||| || | ||||||||| |||||||| | ||| Sbjct 706164 GATGTTGTAATCGGCAAGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCT 706105 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || ||||| || ||||| || ||| |||||| || || | Sbjct 706104 CTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTTACGTTGTCAATGGT 706045 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| || || || || ||||| || || || || ||||| | |||||||| Sbjct 706044 GTCGGAGGATTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTCACGAATATCTG 705985 Query 192534 CAT 192536 ||| Sbjct 705984 CAT 705982 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| | || || ||||| | ||| | || || ||||||||||||| Sbjct 706895 ATACCACCACGAAGCCTCAACACCAAATGCAGAGTGGATTCCTTCTGGATATTATAATCA 706836 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || || || ||||| || | ||||| || || ||| Sbjct 706835 GCCAGGGTACGCCCATCTTCCAGCTGCTTCCCTGCAAAAATAAGCCTCTGCTGGTCTGGT 706776 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || ||||| || || |||||| || | || || ||| Sbjct 706775 GGAATACCTTCCTTGTCCTGTATCTTTGCCTTCACATTATCGATGGTGTCAGAGCTTTCA 706716 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| ||||| || || |||| ||| || ||||| Sbjct 706715 ACCTCCAAAGTTATGGTTTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 706666 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || |||||| | ||| || | || | ||| || || | || || ||||| ||||| Sbjct 702495 AAAACCACCGCGAAGGCGAAGGACGAGATGCAAGGTGGATTCCTTCTGAATATTGTAATC 702436 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || || || |||| |||| ||| || |||||||| || | ||||| |||||||| Sbjct 702435 TGCCAAGGTACGACCATCTTCCAGTTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCAGG 702376 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || || || || || || || |||||| || | ||| || ||| Sbjct 702375 TGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTATCAATGGTATCAGAACTTTC 702316 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| ||||| || || |||| ||| || ||||| Sbjct 702315 AACCTCCAAAGTTATGGTTTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 702265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||| | || || || | || | || || || || |||||| Sbjct 702038 ATACCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCA 701979 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||||||||| ||||| || | ||||| ||||| || Sbjct 701978 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGG 701919 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || || || |||||| || | || || ||||| Sbjct 701918 GGGATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCC 701859 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || || || || | ||| || ||||| Sbjct 701858 ACCTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 701809 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||| | || || || | || | || || || || |||||| Sbjct 706439 ATACCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCA 706380 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||||||||| ||||| || | ||||| ||||| || Sbjct 706379 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGG 706320 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || || || |||||| || | || || ||||| Sbjct 706319 GGGATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCC 706260 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || || || || | ||| || ||||| Sbjct 706259 ACCTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 706210 >seq25741 Length=849835 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| || || | || | ||||| |||||| || || || |||| Sbjct 275260 CCACCACGAAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCA 275201 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || | | |||| |||| ||| || ||||||||||| || |||||||| || || || Sbjct 275200 AGAGTCCTTCCATCCTCCAGTTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGG 275141 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || |||||||| || |||||| || | ||||| ||| || Sbjct 275140 ATACCTTCCTTGTCCTGTATTTTTGCCTTGACATTATCAATTGTGTCTGAACTTTCAACC 275081 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || ||||| || || || || || | ||| |||||||| Sbjct 275080 TCCAAGGTGATAGTTTTCCCTGTCAAAGTCTTCACAAAGATCTGCAT 275034 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| || || | || | ||||| |||||| || || || |||| Sbjct 295954 CCACCACGAAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCA 296013 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || | | |||| |||| ||| || ||||||||||| || |||||||| || || || Sbjct 296014 AGAGTCCTTCCATCCTCCAGTTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGG 296073 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || |||||||| || |||||| || | ||||| ||| || Sbjct 296074 ATACCTTCCTTGTCCTGTATTTTTGCCTTGACATTATCAATTGTGTCTGAACTTTCAACC 296133 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || ||||| || || || || || | ||| |||||||| Sbjct 296134 TCCAAGGTGATAGTTTTCCCTGTCAAAGTCTTCACAAAGATCTGCAT 296180 >seq21796 Length=372373 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTT-AGAGATATTATAATCAGA 192368 ||||| | |||||| | || | || | ||||| |||||| ||| || || || |||| Sbjct 116275 CCACCACGAAGACGCAGCACAAGGTGAAGAGTAGACTCTTTCAGA-ATGTTTTAGTCAGC 116217 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAA-TCTCTGTTGATCAGGTG 192427 | ||| | | |||| |||||||| || ||||||||||| || ||| | || || ||| Sbjct 116216 AAGTGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCCTCCGCTGGTCTGGTA 116157 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||| || || || || | ||| ||| |||||| || | ||||| ||| | Sbjct 116156 GGATTCCCTCCTTGTCCTGGAATTTTGCTTTGACATTATCAATTGTGTCTGAACTTTCAA 116097 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || | || | | |||||| | || || || | ||| ||||||||| Sbjct 116096 CCTCCAAGGTGACAGATTTACCTATCAAAGTCTTCACAAAGATCTGCATT 116047 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || | || || || | |||| ||||| ||| || |||||| Sbjct 99090 ATCCCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCA 99031 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| || | || || ||||||||||| | ||||||||||| ||| Sbjct 99030 GCCAAGGTTCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATGAGCCTCTGTTGATCTGGT 98971 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || || || ||||| || | || || || Sbjct 98970 GGGATACCCTCTTTGTCCTGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCC 98911 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || || || || || | || |||| ||| || |||||| Sbjct 98910 ACCTCAAGGGTGATTGTCTTTCCGGTCAGAGTCTTAACAAAGATTTGCATT 98860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984061605229500