Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq21796 123 2e-23 seq25741 111 1e-19 seq3517 107 2e-18 seq21071 104 2e-17 seq7180 86.0 5e-12 >seq21796 Length=372373 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| ||| | || || || ||||| ||| | || |||| || Sbjct 99089 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 99148 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || || Sbjct 99149 GAC---ACTATTGACAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGAC 99205 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || |||| ||| || |||||||| || |||| | |||| |||| |||||| Sbjct 99206 CAACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTAC 99265 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| |||||||||||||| | ||| ||||| | | ||||| || || Sbjct 99266 AACATCCAAAAAGAATCTACCCTCCACTTGGTGCTCCGTCTGCGCGGTGG 99315 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 ||||||||| ||||| || ||| | ||||| || || || ||| | || |||| | Sbjct 98860 AATGCAAATCTTTGTTAAGACTCTGACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTC 98919 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || | | | | || || |||||| |||||||| || | || || Sbjct 98920 TGAC---ACCATTGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGA 98976 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 |||||| || || || | ||| || || ||||| || |||| | |||| |||| ||||| Sbjct 98977 TCAACAGAGGCTCATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGAACCTTGGCTGATTA 99036 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| |||||||||||||| | ||| |||| Sbjct 99037 CAACATCCAAAAAGAATCTACCCTCCACTTGGT 99069 >seq25741 Length=849835 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| || | || || || ||||| ||| | || |||| || Sbjct 274578 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 274637 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || || Sbjct 274638 GAC---ACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGAC 274694 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || |||| ||| || |||||||| || |||| | |||| |||| |||||| Sbjct 274695 CAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTAC 274754 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||||||||| | ||| ||||| Sbjct 274755 AACATCCAGAAAGAATCTACCCTCCACTTGGTG 274787 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| || | || || || ||||| ||| | || |||| || Sbjct 296636 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 296577 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || || Sbjct 296576 GAC---ACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGAC 296520 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || |||| ||| || |||||||| || |||| | |||| |||| |||||| Sbjct 296519 CAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTAC 296460 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||||||||| | ||| ||||| Sbjct 296459 AACATCCAGAAAGAATCTACCCTCCACTTGGTG 296427 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| || | || || || || || ||| | || |||| || Sbjct 274350 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAGAGCTCT 274409 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| |||||| ||||||||||| | || || Sbjct 274410 GAC---ACTATTGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGAC 274466 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| || || |||| ||| || |||||||| ||||||| | | || | || |||||| Sbjct 274467 CAACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGTACCCTTGCCGATTAC 274526 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| ||||| || || | ||| ||||| Sbjct 274527 AACATTCAGAAAGAGTCCACCCTCCACCTGGTG 274559 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || || || || |||||| | || |||| | Sbjct 274122 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACAATTACCCTTGAGGTGGAGAGTTCT 274181 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| |||||||| || | || || ||| Sbjct 274182 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCCGACCAA 274241 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| ||||||| | | || | || ||||||||| Sbjct 274242 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCCGATTACAAC 274301 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| ||||| || || | ||| ||||| Sbjct 274302 ATTCAGAAAGAGTCGACCCTCCACCTGGTG 274331 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || || || || |||||| | || |||| | Sbjct 296864 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACAATTACCCTTGAGGTGGAGAGTTCT 296805 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| |||||||| || | || || ||| Sbjct 296804 GACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCCGACCAA 296745 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| ||||||| | | || | || ||||||||| Sbjct 296744 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCCGATTACAAC 296685 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| ||||| || || | ||| ||||| Sbjct 296684 ATTCAGAAAGAGTCCACCCTCCACCTGGTG 296655 >seq3517 Length=1029689 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || |||||||| |||||||| ||||| ||| | || ||| | | Sbjct 701581 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 701640 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | |||||| |||||| ||||| ||||| | || || || Sbjct 701641 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 701700 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | |||||||||||| || ||||||| | || | || ||||||||| Sbjct 701701 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCTGATTACAAC 701760 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| ||||| || Sbjct 701761 ATCCAAAAGGAATCAAC 701777 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || |||||||| |||||||| ||||| ||| | || ||| | | Sbjct 705982 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 706041 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | |||||| |||||| ||||| ||||| | || || || Sbjct 706042 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 706101 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | |||||||||||| || ||||||| | || | || ||||||||| Sbjct 706102 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 706161 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| ||||| || Sbjct 706162 ATCCAAAAGGAATCAAC 706178 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| ||||| || ||||| ||| | || ||| | Sbjct 701809 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 701868 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||| ||| | ||| ||||| Sbjct 701869 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 701928 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| ||| |||||||| || ||||||| ||||| | || ||||||||| Sbjct 701929 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 701988 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || | ||| ||||| Sbjct 701989 ATTCAGAAGGAATCCACCCTTCACTTGGTG 702018 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| ||||| || ||||| ||| | || ||| | Sbjct 706210 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 706269 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||| ||| | ||| ||||| Sbjct 706270 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 706329 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| ||| |||||||| || ||||||| ||||| | || ||||||||| Sbjct 706330 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 706389 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || | ||| ||||| Sbjct 706390 ATTCAGAAGGAATCCACCCTTCACTTGGTG 706419 >seq21071 Length=2748687 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||||| ||||| || ||||| ||| | || |||| | | Sbjct 2709385 ATGCAGATCTTCGTGAAAACTTTGACCGGTAAGACCATCACCCTTGAGGTGGAGTCCTCC 2709326 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| |||||| ||||| ||||| | || || || Sbjct 2709325 GACACCATCGATAACGTGAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 2709266 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||||||||||||||| ||||||| |||| | || || |||||| Sbjct 2709265 CAGAGACTTATCTTTGCGGGTAAACAGCTTGAGGATGGTCGAACCCTTGCCGACTACAAC 2709206 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| ||||| || | ||| | ||| Sbjct 2709205 ATCCAAAAGGAATCCACTCTCCACCTCGTG 2709176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| || || || ||||| ||| | || |||| | Sbjct 2708929 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACCTTGGAGGTGGAGAGTTCA 2708870 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| || || || || | ||| || || Sbjct 2708869 GATACCATAGACAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 2708810 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||||||||| || |||| |||| | || ||||| ||| Sbjct 2708809 CAGAGGCTTATCTTTGCTGGTAAACAGCTTGAAGATGGACGAACCCTTGCAGATTATAAC 2708750 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || |||||||| ||||| |||| || || || || || || Sbjct 2708749 ATCCAGAAGGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGG 2708703 >seq7180 Length=1421306 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| ||||||||||||| ||||| | || ||| | Sbjct 1039053 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATTACGCTAGAGGTAGAGTCCTCT 1039112 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| |||||| || || ||||| | || |||||| Sbjct 1039113 GACACAATCGATAACGTGAAAGCGAAGATCCAGGATAAGGAAGGTATTCCACCGGATCAG 1039172 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | || || || ||| |||| || | |||||| | || |||||||| Sbjct 1039173 CAACGTCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGAACCCTTGCCGATTACAAT 1039232 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| ||||| ||| | || ||||| Sbjct 1039233 ATTCAAAAGGAATCGACGCTTCATCTGGTG 1039262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412674704912810