Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq9554 201 3e-47 seq31176 179 9e-41 >seq9554 Length=23572 Score = 201 bits (222), Expect = 3e-47 Identities = 306/434 (71%), Gaps = 4/434 (1%) Strand=Plus/Plus Query 18644 TGATCACTCGAACCATGCCGACGCTTACTGTTATAAAACATTTCGATGTAATCAAAAATA 18703 ||| || | ||||| || | || ||| ||||||||||| || || || ||||||||| Sbjct 3905 TGACCAATGGAACCGTGTCTGCGTTTAGAATTATAAAACATCTCAATATACTCAAAAATA 3964 Query 18704 TCACCGCGAGCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGT 18763 || |||||| |||| | || || || || || || | ||||| || || Sbjct 3965 TCTGATTTAGCTTCCTCTCTTGAAAGATATATTTTCTTTTTGATTCTCTCACGCTTTAGC 4024 Query 18764 AGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTG 18823 | ||| || || ||||| || || || || ||||| || || || || | |||||||||| Sbjct 4025 AACTGAAAGAAGCTTTCAGCAACCGCATTATCATGGCAATTGCCTCGTCTGCTCATACTG 4084 Query 18824 CCCTCCAGCCCGTGTGAT--TTCAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGC 18881 | || || | |||| || || |||| |||||| |||| || || || ||||||| Sbjct 4085 CTTTCAAG--ATTATGATGCTTAAGAAACGCCTGCCATTCATGACTAGTATATTGACTGC 4142 Query 18882 CTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAA 18941 |||| |||||||| | |||||| | || | |||||| | || || ||||||| | Sbjct 4143 CTTGGTCAGAATGGATCAGCACTTTATTCTTAGGATTTCTTCTAAGCAAAGCCATCAATA 4202 Query 18942 GTGCATTCAGGACAATATCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGC 19001 ||||| || |||| || | || |||| | || |||||||||||||| || || Sbjct 4203 ATGCATCTAGTACAAGGTCTGTGGTAATCCTTGACTTCATTGACCAGCCAACGACAAGGC 4262 Query 19002 GCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGG 19061 |||| |||||||||| ||||| || | ||| ||||| ||||| || || ||||| || | Sbjct 4263 GCGAAAACAGGTCAATTACCACTGCTAAATATAGCCATCCTTCATGTGTACGGATATAAG 4322 Query 19062 TGATGTCCGTTACC 19075 | || || || ||| Sbjct 4323 TAATATCTGTGACC 4336 >seq31176 Length=6204 Score = 179 bits (198), Expect = 9e-41 Identities = 303/437 (69%), Gaps = 4/437 (1%) Strand=Plus/Minus Query 18644 TGATCACTCGAACCATGCCGACGCTTACTGTTATAAAACATTTCGATGTAATCAAAAATA 18703 ||| || | ||||| || | || ||| ||||||||||| || || || ||||||||| Sbjct 3822 TGACCAATGGAACCGTGTCTGCGTTTAGAATTATAAAACATCTCAATATACTCAAAAATA 3763 Query 18704 TCACCGCGAGCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGT 18763 || |||||| |||| | || || || || || || | ||||| || || Sbjct 3762 TCTGATTTAGCTTCCTCTCTTGAAAGATATATTTTCTTTTTGATTCTCTCACGCTTTAGC 3703 Query 18764 AGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTG 18823 | ||| || || ||||| || || || || ||||| || || || || | |||||||||| Sbjct 3702 AACTGAAAGAAGCTTTCAGCAACCGCATTATCATGGCAATTGCCTCGTCTGCTCATACTG 3643 Query 18824 CCCTCCAGCCCGTGTGAT--TTCAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGC 18881 | || || | |||| || || |||| |||||| |||| || || || ||||||| Sbjct 3642 CTTTCAAGAT--TATGATGCTTAAGAAACGTCTGCCATTCATGACTAGTATATTGACTGC 3585 Query 18882 CTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAA 18941 |||| |||||||||| |||||| | || | ||| || | || || ||||||| | Sbjct 3584 CTTGGTCAGAATGAATCAGCACTTTATTCTTAGGGTTTCTTCTAAGCAAAGCCATCAATA 3525 Query 18942 GTGCATTCAGGACAATATCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGC 19001 ||||| || |||| || | || |||| | || ||| |||||||||| || || Sbjct 3524 ATGCATCTAGTACAAGGTCTGTGGTAATCCTTGACTTCATAGACCAGCCAACTACAAGGC 3465 Query 19002 GCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGG 19061 ||| || ||||||| ||||| || | ||| ||||| |||| || || | ||| || | Sbjct 3464 ACGAAAATAGGTCAATTACCACTGCTAAATATAGCCATCCTTTATGTGTACCGATATAAG 3405 Query 19062 TGATGTCCGTTACCCAA 19078 | || || | |||||| Sbjct 3404 TAATATCTATGACCCAA 3388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127053934528800