Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq21071 100 2e-16 seq30922 98.7 8e-16 seq3517 95.1 1e-14 >seq21071 Length=2748687 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| ||||| || || || ||||| ||| | || |||| | Sbjct 2708929 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACCTTGGAGGTGGAGAGTTCA 2708870 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| ||||| || || | ||| || ||| Sbjct 2708869 GATACCATAGACAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 2708810 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| ||||||||||| || || | ||| | || || || ||| Sbjct 2708809 CAGAGGCTTATCTTTGCTGGTAAACAGCTTGAAGATGGACGAACCCTTGCAGATTATAAC 2708750 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || || ||||| ||||| ||||| |||| ||||| Sbjct 2708749 ATCCAGAAGGAATCTACCCTGCACTTGGTTTTGAG 2708715 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || |||||||| || || || ||||| ||| | || |||| | | Sbjct 2709385 ATGCAGATCTTCGTGAAAACTTTGACCGGTAAGACCATCACCCTTGAGGTGGAGTCCTCC 2709326 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| |||||| || || ||||| | || || ||| Sbjct 2709325 GACACCATCGATAACGTGAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 2709266 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||||||||||||||| ||||| | ||| | || ||||||||| Sbjct 2709265 CAGAGACTTATCTTTGCGGGTAAACAGCTTGAGGATGGTCGAACCCTTGCCGACTACAAC 2709206 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| || || | ||| | ||| Sbjct 2709205 ATCCAAAAGGAATCCACTCTCCACCTCGTG 2709176 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| |||||||| || || || || || ||| | || |||| || Sbjct 2704708 ATGCAGATCTTTGTGAAAACTTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCT 2704649 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | || ||| ||||||| || || ||||| | || |||||| Sbjct 2704648 GACAGCATCGAAAACGTGAAAGCTAAGATTGAAGAAAAGGAAGGGATCCCACCTGATCAG 2704589 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || ||||| || || || | | ||| | | ||||| | Sbjct 2704588 CAGAGGCTTATCTTTGCCGGGAAACAACTTGAAGATGGAAGAACCCTTGAAGACTATGAA 2704529 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||| || ||| ||||| |||||||| Sbjct 2704528 ATCCAGAAGGAATCAACGCTGCACTTGGTGTTG 2704496 >seq30922 Length=1454590 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || || || || |||||| |||| |||| ||| Sbjct 136503 ATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACTATTACCCTCGAGGTGGAGAGCTC- 136561 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| || || ||||| | || ||| || Sbjct 136562 CGACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCACCGGACCA 136621 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| || |||||||| ||||| | | || | || |||||||| Sbjct 136622 GCAGAGGCTTATTTTTGCTGGCAAACAGCTAGAGGATGGAAGGACCCTCGCTGACTACAA 136681 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || |||||||| || ||||| |||||||| | | || ||||| Sbjct 136682 CATCCAGAAGGAGTCAACTCTGCACTTGGTGTTGCGTCTTCGTGGGGG 136729 >seq3517 Length=1029689 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| ||||| || || || ||||| ||| | || ||| | Sbjct 701809 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 701868 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || ||||| ||| | ||| |||||| Sbjct 701869 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 701928 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| |||||||| || ||||| | | ||| | || || |||||| Sbjct 701929 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 701988 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||| || || | ||| ||||| | | ||| |||| || Sbjct 701989 ATTCAGAAGGAATCCACCCTTCACTTGGTGCTTCGTTTGAGAGGTGG 702035 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| ||||| || || || ||||| ||| | || ||| | Sbjct 706210 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 706269 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || ||||| ||| | ||| |||||| Sbjct 706270 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 706329 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| |||||||| || ||||| | | ||| | || || |||||| Sbjct 706330 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 706389 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||| || || | ||| ||||| | | ||| |||| || Sbjct 706390 ATTCAGAAGGAATCCACCCTTCACTTGGTGCTTCGTTTGAGAGGTGG 706436 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || |||||||| || ||||| ||||| ||| | || ||| | | Sbjct 701581 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 701640 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | |||||| |||||| || || ||||| | || || ||| Sbjct 701641 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 701700 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | |||||||||||| || ||||| | || | || || |||||| Sbjct 701701 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCTGATTACAAC 701760 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||| || || Sbjct 701761 ATCCAAAAGGAATCAAC 701777 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || |||||||| || ||||| ||||| ||| | || ||| | | Sbjct 705982 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 706041 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | |||||| |||||| || || ||||| | || || ||| Sbjct 706042 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 706101 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | |||||||||||| || ||||| | || | || || |||||| Sbjct 706102 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 706161 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||| || || Sbjct 706162 ATCCAAAAGGAATCAAC 706178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398715550314130