Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3517 113 4e-20 seq7180 107 2e-18 seq646 105 7e-18 seq21071 87.8 2e-12 >seq3517 Length=1029689 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| ||||| ||||||||||| | |||| || || ||||||||||| Sbjct 701777 GTTGATTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGACCATCCTCAAGTTGTTTACCC 701718 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | ||||| || || || || ||||| ||||| ||| || |||| Sbjct 701717 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTT 701658 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || ||| || |||| || | |||||||||||||| ||| Sbjct 701657 ACGTTGTCAATGGTGTCGGAGGATTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTT 701598 Query 137395 TTTACGAATATTTGCAT 137411 ||||||||||| ||||| Sbjct 701597 TTTACGAATATCTGCAT 701581 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| ||||| |||||||||||| | |||| || || ||||||||||| Sbjct 706178 GTTGATTCCTTTTGGATGTTGTAATCGGCAAGGGTGCGACCATCCTCAAGTTGTTTACCC 706119 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | ||||| || || || || ||||| ||||| ||| || |||| Sbjct 706118 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTT 706059 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || ||| || |||| || | |||||||||||||| ||| Sbjct 706058 ACGTTGTCAATGGTGTCGGAGGATTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTT 705999 Query 137395 TTTACGAATATTTGCAT 137411 || |||||||| ||||| Sbjct 705998 TTCACGAATATCTGCAT 705982 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||||| | || || |||| || ||||| || || ||||||||||| Sbjct 702035 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 701976 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || ||||||||||| ||| | ||||| | |||||||| || || Sbjct 701975 AGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGG 701916 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| |||||||| || || || | | || | ||||| | || ||| || Sbjct 701915 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCACC 701856 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| |||||||| || || || || |||||||| Sbjct 701855 TCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 701809 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||||| | || || |||| || ||||| || || ||||||||||| Sbjct 706436 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 706377 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || ||||||||||| ||| | ||||| | |||||||| || || Sbjct 706376 AGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGG 706317 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| |||||||| || || || | | || | ||||| | || ||| || Sbjct 706316 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCACC 706257 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| |||||||| || || || || |||||||| Sbjct 706256 TCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 706210 >seq7180 Length=1421306 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || ||||| | || |||||||| || || ||||||||| Sbjct 1039051 CCTCCGCGGAGACGAAGCACCAAATGCAGAGTCGATTCTTTCTGGATATTGTAATCGGCG 1038992 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||||||||||||| || || |||||| |||||||||||| ||||| Sbjct 1038991 AGGGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGATCCGGAGGA 1038932 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| || ||| | | || | ||||| | || || || Sbjct 1038931 ATCCCTTCCTTATCTTGAATCTTGGCTTTCACGTTATCGATTGTGTCGGAGGACTCCACC 1038872 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| || | ||||| ||||| |||||||| Sbjct 1038871 TCTAGCGTGATTGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 1038825 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || | ||||| || ||||| ||||| || ||||||||| Sbjct 1039279 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCA 1039220 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| | || || || || |||| |||||||||||||| || || Sbjct 1039219 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 1039160 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || || || ||| | | || | ||||| | || ||||| Sbjct 1039159 ATACCTTCCTTATCCTGGATCTTCGCTTTCACGTTATCGATTGTGTCAGAGGACTCTACC 1039100 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||| |||||||| | ||||| ||||| || ||||| Sbjct 1039099 TCTAGCGTAATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 1039053 >seq646 Length=2337744 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || |||||||| || || ||||||||| | || || |||||||||||||||||| Sbjct 1860127 GTCGATTCTTTCTGGATATTGTAATCGGCGAGAGTTCTGCCGTCTTCGAGTTGTTTACCG 1860068 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||||| ||| |||||||| || || |||||||| ||||| ||||| ||| Sbjct 1860067 GCGAAGATCAAACGCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTC 1860008 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || || || || | || | ||| || ||||| | ||| Sbjct 1860007 ACGTTATCGATTGTGTCGGAGGACTCGACCTCTAGCGTAATCGTTTTACCGGTTAGGGTT 1859948 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 1859947 TTGACGAAGATCTGCATA 1859930 >seq21071 Length=2748687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| |||||| | ||| || || | ||||| || || || || |||||||| Sbjct 2708930 GCCACCTCTTAAACGAAGAACCAAGTGTAAGGTAGACTCCTTCTGAATATTGTAATCAGC 2708989 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || || || ||||||||||||||| | |||| | |||||||| ||||| Sbjct 2708990 AAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAATATCAACCTCTGCTGATCTGGAGG 2709049 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || || | | || | ||||| | || ||| || Sbjct 2709050 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGATTCGAC 2709109 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||| ||||| || || || || |||||||| Sbjct 2709110 CTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 2709157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488341437444000