Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq24624 509 5e-140 seq29915 381 2e-101 seq32525 318 2e-82 seq6217 147 7e-31 seq20192 111 5e-20 seq2730 80.6 8e-11 >seq24624 Length=74067 Score = 509 bits (564), Expect = 5e-140 Identities = 657/896 (73%), Gaps = 12/896 (1%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| | || ||||| || || | ||| || |||||||| || || || || || Sbjct 18449 TTTATTATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 18390 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCA 19715 || || || |||||||||||||| ||||| || || ||| | |||| | | || Sbjct 18389 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 18330 Query 19716 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCT 19775 || || || | ||||| || || ||||||||||| || ||||||||||| | | Sbjct 18329 --GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTAT 18272 Query 19776 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CTATGCTTA 19833 | ||||| || || | |||| | | | |||||| | |||| | || |||| | Sbjct 18271 ATAACGGCGGTCCTTATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCT-TGCT-A 18214 Query 19834 CATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGC 19893 |||||| || |||||||||||||| | ||| | || ||| | ||||||||| |||||| Sbjct 18213 CATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGC 18154 Query 19894 CTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGG 19952 || || ||||| ||||||||||| |||| || ||||| | |||| || ||||||||| Sbjct 18153 ATATTCAGCTCCTGTTGCAGCCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAGG 18095 Query 19953 GTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTAT 20012 | ||||| || |||| ||||||| | || || || ||||| | ||| | ||| | |||| Sbjct 18094 GAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTAT 18035 Query 20013 TCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTAT 20072 | || || | ||||| ||||| ||||| || || |||||| | | ||| |||||||||| Sbjct 18034 TTCAGGCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTAT 17975 Query 20073 TCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GT 20131 |||| || || |||||||||| ||||| ||||| |||| || | || | ||| | | Sbjct 17974 TCGGCGGCTCCTTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCAGG 17916 Query 20132 GAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACC 20191 || || || ||| | ||| | || | ||||||| ||||| ||||| ||||| ||| Sbjct 17915 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACC 17856 Query 20192 TATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTC 20251 ||||| || ||||| ||||||||||| ||||| || |||||||||||||| || |||| Sbjct 17855 TATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTC 17796 Query 20252 AACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTC 20311 |||||| |||||| |||| |||||| | ||||| ||||| || ||||| |||||||| Sbjct 17795 AACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTT 17736 Query 20312 GCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCC 20371 | || || || | || ||||| || || | || |||||||| || ||||| ||| Sbjct 17735 ACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCC 17676 Query 20372 CTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAAT 20431 | | || | | |||||||| ||| |||| |||||||| ||| | || || ||||| Sbjct 17675 GTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAAC 17616 Query 20432 CTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || || | || || ||||||||||| ||||||||||| ||||| || || || || Sbjct 17615 CTTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 17560 >seq29915 Length=314255 Score = 381 bits (422), Expect = 2e-101 Identities = 435/575 (76%), Gaps = 8/575 (1%) Strand=Plus/Plus Query 19730 CACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCG 19789 ||||| || || ||||||||||| || ||||||||||| | || ||||| | || Sbjct 233403 CACTTTTATCCTATTTGGGAAGCGGCATCTATTGATGAATGGTTATATAACGGCGATCCT 233462 Query 19790 TTCCAACTTGTGGTCTTCCACTTCCTCATTG--GCATCTATGCTTACATGGGACGAGAGT 19847 | |||| | || | |||||| | ||| | | || ||| |||||||| || |||| Sbjct 233463 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGGCGTGAGT 233520 Query 19848 GGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGG 19907 |||||||||| | ||| | || ||| | ||||||||| |||||| || || ||||| | Sbjct 233521 GGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTG 233580 Query 19908 TTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGAT 19966 |||||||||| |||| || ||||| | |||| || |||||||||| ||||| || ||| Sbjct 233581 TTGCAGCCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGAT 233639 Query 19967 GCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACAT 20026 | ||||||| | || || || ||||| ||||| | ||| | ||||| || || || ||| Sbjct 233640 GGTATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCAT 233699 Query 20027 AACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTA 20086 || ||||| ||||| || || |||||| | ||||| |||||||||||||| || || ||| Sbjct 233700 AATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 233759 Query 20087 TTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACA 20145 |||||||| ||||| ||||| |||| || | || | ||| | | || || || ||| | Sbjct 233760 TTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 233818 Query 20146 GGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGC 20205 ||| | || | ||||||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 233819 TGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGC 233878 Query 20206 CGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTC 20265 ||||||||||| ||||| || |||||||||||||| || |||||||||| ||||| Sbjct 233879 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTC 233938 Query 20266 TCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAG 20300 | |||| |||||| | ||||| ||||| || |||| Sbjct 233939 TTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAG 233973 >seq32525 Length=219324 Score = 318 bits (352), Expect = 2e-82 Identities = 484/678 (71%), Gaps = 12/678 (2%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | || |||||||| |||| |||||||| ||||||| Sbjct 125568 TAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 125627 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 ||| | | | | || || |||| || ||||| || || ||||| || || |||| Sbjct 125628 TCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTTATTGCTGCCCCTCCAG 125686 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || || || || || || || |||||||||||||| |||| Sbjct 125687 TAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCA 125746 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | || || || || | ||||| || || ||||| Sbjct 125747 TTTCTGGTGCCATTATTCCTACTTCTGCG--GCTATAGGTTTGCACTTTTATCCTATTTG 125804 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 || ||| || ||||||||||| | |||||||| || || | |||| | || | Sbjct 125805 GGGAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCT 125864 Query 19807 CCACTTCCTCATTG--GCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGA 19864 |||||| | ||| | | || ||| |||||||| || |||||||||||||| | ||| Sbjct 125865 ACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGGCGTGAGTGGGAACTTAGTTTTCGT 125922 Query 19865 CTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCG 19924 | || ||| | ||||||||| |||||| || || ||||| ||||||||||| |||| Sbjct 125923 TTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCT 125982 Query 19925 GTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATC 19984 || ||| | |||| || |||||||||| ||||| || |||| ||||||| | || || Sbjct 125983 GTTTTTTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATT 126042 Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || | ||| ||||| | ||| | ||||| || || | ||||| ||||| ||||| || Sbjct 126043 TCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCATCCA 126102 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || |||||| | ||||| |||||||||||||| || || ||||||||||| ||| | ||| Sbjct 126103 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTATGGT 126162 Query 20105 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGG 20163 || |||| || | | | ||| | | || || || ||| | ||| | || | || Sbjct 126163 TC-CTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 126221 Query 20164 TTACAAGTTTGGGCAAGA 20181 ||||| ||||| ||||| Sbjct 126222 TTACAGATTTGGTCAAGA 126239 >seq6217 Length=83728 Score = 147 bits (162), Expect = 7e-31 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 19914 CCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATG 19972 |||| |||| || ||||| | |||| || |||||||||| ||||| || |||| |||| Sbjct 30538 CCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATG 30596 Query 19973 CCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATT 20032 ||| | || || || | ||| ||||| | ||| | ||||| || || | ||||| ||| Sbjct 30597 CCTCTAGGAATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATT 30656 Query 20033 CTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGT 20092 || ||||| || || |||||| | ||||| |||||||||||||| || || ||||||||| Sbjct 30657 CTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGT 30716 Query 20093 GCGATGCACGGTT 20105 || ||||| |||| Sbjct 30717 GCTATGCATGGTT 30729 >seq20192 Length=443579 Score = 111 bits (122), Expect = 5e-20 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 19989 GTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCC 20048 |||| ||||| | ||| | ||||| || || || ||||| ||||| ||||| || || | Sbjct 96327 GTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTC 96268 Query 20049 ACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGC 20108 ||||| | ||||| |||||||||||||| || || ||||||||||| ||||| ||||| | Sbjct 96267 ACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-C 96209 Query 20109 TTGTTA 20114 ||| || Sbjct 96208 TTGGTA 96203 >seq2730 Length=91666 Score = 80.6 bits (88), Expect = 8e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 ||||| ||||| ||||| ||||| |||||||| || ||||| ||||||||||| ||||| Sbjct 1481 TTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGG 1540 Query 20224 ACGTTTGATCTT 20235 || |||||||| Sbjct 1541 CCGATTGATCTT 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148770177265860