Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq24624 466 5e-127 seq29915 315 2e-81 seq32525 266 9e-67 seq29178 91.5 4e-14 seq646 80.6 8e-11 >seq24624 Length=74067 Score = 466 bits (516), Expect = 5e-127 Identities = 646/896 (72%), Gaps = 10/896 (1%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| | || ||||| || || | ||| || |||||||| || || || ||||| Sbjct 18449 TTTATTATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 18390 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCA 28843 ||||| ||| || ||||||||||| ||||| || || ||| | | || | | || Sbjct 18389 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 18330 Query 28844 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 28903 || || || | ||||| || || ||||||||||| || ||||||||||| | | Sbjct 18329 --GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTAT 18272 Query 28904 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCTTA 28961 | ||||| || || | |||| | | | |||||| | |||| || || |||| | Sbjct 18271 ATAACGGCGGTCCTTATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCT-TGCT-A 18214 Query 28962 CATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGC 29021 |||||| || |||||||||||||| | ||| | || ||| | || |||||| ||| || Sbjct 18213 CATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGC 18154 Query 29022 ATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGG 29081 ||| |||||||| || ||||| || |||| |||||| | |||| || | ||||| || Sbjct 18153 ATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGG 18094 Query 29082 TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTT 29141 ||| || | |||||| | || |||||||| || | ||| | ||| | || || Sbjct 18093 AAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATT 18034 Query 29142 CCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTT 29201 || || | ||||| ||||| ||||| || || |||||| ||| || ||||| || || Sbjct 18033 TCAGGCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATT 17974 Query 29202 CGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTG 29260 ||| ||||| |||| ||||| ||||| ||||| | || || || | | ||| | | | Sbjct 17973 CGGCGGCTCCTTATTCAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGATCAGGG 17915 Query 29261 AGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTT 29320 | || || ||| | ||| || | ||||||| ||||| ||||| ||||| || | Sbjct 17914 AAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCT 17855 Query 29321 ATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCA 29380 |||| || ||||| ||||| ||||| ||||| || ||||||||||||||||| ||||| Sbjct 17854 ATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCA 17795 Query 29381 ATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCG 29440 | ||| |||||| |||| |||||| | ||||| ||||| || ||||| |||||||| Sbjct 17794 ACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTA 17735 Query 29441 CTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGC 29500 | || || || | || ||||| || || | || ||||| || || ||||| || Sbjct 17734 CCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCG 17675 Query 29501 TTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACC 29560 | | || | | |||||||| |||||||| ||||||||| || | || || ||||||| Sbjct 17674 TAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACC 17615 Query 29561 TCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 | || | |||||||||||||| |||||||||||||| ||||| || ||||| ||| Sbjct 17614 TTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCT 17559 >seq29915 Length=314255 Score = 315 bits (348), Expect = 2e-81 Identities = 418/574 (73%), Gaps = 6/574 (1%) Strand=Plus/Plus Query 28858 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 28917 ||||| || || ||||||||||| || ||||||||||| | || ||||| | || Sbjct 233403 CACTTTTATCCTATTTGGGAAGCGGCATCTATTGATGAATGGTTATATAACGGCGATCCT 233462 Query 28918 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGT 28975 | |||| | || | |||||| | |||| || || ||| |||||||| || |||| Sbjct 233463 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGGCGTGAGT 233520 Query 28976 GGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCG 29035 |||||||||| | ||| | || ||| | || |||||| ||| ||||| |||||||| | Sbjct 233521 GGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTG 233580 Query 29036 TCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACG 29095 | ||||| || |||| |||||| | |||| || | ||||| || ||| || | Sbjct 233581 TTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATG 233640 Query 29096 CGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATA 29155 |||||| | || |||||||| || ||||| | ||| | || || || || || |||| Sbjct 233641 GTATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATA 233700 Query 29156 ACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTAT 29215 | ||||| ||||| || || |||||| | || || ||||| || ||||| ||||| |||| Sbjct 233701 ATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 233760 Query 29216 TTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGAC 29274 | ||||| ||||| ||||| |||| | | || | ||| | | || || || ||| | Sbjct 233761 TCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 233819 Query 29275 ATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCC 29334 ||| || | ||||||| ||||| ||||| ||||| || ||||| || ||||| Sbjct 233820 GAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCT 233879 Query 29335 GCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCT 29394 ||||| ||||| ||||| || ||||||||||||||||| |||||| ||| |||||| Sbjct 233880 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCT 233939 Query 29395 CTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAG 29428 |||| |||||| | ||||| ||||| || |||| Sbjct 233940 TTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAG 233973 >seq32525 Length=219324 Score = 266 bits (294), Expect = 9e-67 Identities = 429/607 (71%), Gaps = 11/607 (2%) Strand=Plus/Plus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | || |||||||| |||| |||||||| ||||||| Sbjct 125568 TAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 125627 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 ||| | | | | || || |||| || ||||| || || ||||| || || |||| Sbjct 125628 TCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTTATTGCTGCCCCTCCAG 125686 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || || ||||| ||||| ||| || ||||||||||| |||| Sbjct 125687 TAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCA 125746 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || ||| | | || | | || || || || | ||||| || || ||||| Sbjct 125747 TTTCTGGTGCCATTATTCCTACTTCTGCG--GCTATAGGTTTGCACTTTTATCCTATTTG 125804 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 || ||| || ||||||||||| | |||||||| || || | |||| | || | Sbjct 125805 GGGAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCT 125864 Query 28935 CCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGA 28992 |||||| | |||| || || ||| |||||||| || |||||||||||||| | ||| Sbjct 125865 ACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGGCGTGAGTGGGAACTTAGTTTTCGT 125922 Query 28993 CTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCG 29052 | || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| Sbjct 125923 TTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCT 125982 Query 29053 GTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATT 29112 ||||| | |||| || | ||||| || ||| || | |||||| | || ||| Sbjct 125983 GTTTTTTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATT 126042 Query 29113 TCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCG 29172 |||| || ||||| | ||| | || || || || | ||||| ||||| ||||| || Sbjct 126043 TCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCATCCA 126102 Query 29173 TTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGT 29232 || |||||| | || || ||||| || ||||| ||||| ||||| ||||| ||| | ||| Sbjct 126103 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTATGGT 126162 Query 29233 TCGCTTG 29239 || |||| Sbjct 126163 TC-CTTG 126168 >seq29178 Length=161839 Score = 91.5 bits (100), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| ||||| ||||| |||| || |||| || |||| || ||| ||||| ||| Sbjct 119043 GGTTACATATTTGGTCAAGAGAAAGAAACCAATAATATTGTAGTCGTTCATGGTTATTTT 119102 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || | ||||| ||||||||||| |||||| ||| |||||| |||| ||||| ||| Sbjct 119103 GGCCCATTGATATTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTACTT 119162 >seq646 Length=2337744 Score = 80.6 bits (88), Expect = 8e-11 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 28859 ACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGT 28918 |||| || || ||||||||||| | || ||||||||||| | |||||||| || || | Sbjct 1979624 ACTTTTATCCTATTTGGGAAGCGACATCTGTTGATGAATGGTTATACAACGGCGGTCCTT 1979683 Query 28919 TCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTG 28976 |||| | || | |||||| | |||| || || ||| |||||||| || ||||| Sbjct 1979684 ATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGGCGTGAGTG 1979741 Query 28977 GGAACTTAGCTATCG 28991 ||||||||| | ||| Sbjct 1979742 GGAACTTAGTTTTCG 1979756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146607829336820