Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7180 98.7 9e-16 seq3517 91.5 1e-13 seq21071 89.7 5e-13 seq6459 89.7 5e-13 seq22486 84.2 2e-11 seq646 82.4 7e-11 >seq7180 Length=1421306 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| | ||| | |||||||||||||| |||| Sbjct 1038790 GACTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCGAGCTGTTTTCCGGCG 1038731 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||||||||| ||||| ||||| || || || ||||| |||| Sbjct 1038730 AAGATCAAACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTCACG 1038671 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | |||||| || | || | ||| || ||||| || ||||| Sbjct 1038670 TTGTCGATGGTGTCAGAGGACTCCACCTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTC 1038611 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1038610 ACGAAGATCTGCAT 1038597 >seq3517 Length=1029689 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | || || || || ||||| ||||| | ||| | | Sbjct 702251 CGCAACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTTCCA 702192 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| || | |||||| ||||| || || ||||| || Sbjct 702191 TCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATACCTTCCTTG 702132 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | || | ||||| | |||||| || | || | Sbjct 702131 TCCTGAATCTTAGCTTTCACATTGTCTATGGTATCTGAACTCTCCACCTCCAAGGTTATG 702072 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| |||||| | |||||||||||| Sbjct 702071 GTCTTTCCGGTCAAAGTTTTAACGAAAATCTGCAT 702037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | || || || || ||||| ||||| | ||| | | Sbjct 706652 CGCAACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTTCCA 706593 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| || | |||||| ||||| || || ||||| || Sbjct 706592 TCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATACCTTCCTTG 706533 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | || | ||||| | |||||| || | || | Sbjct 706532 TCCTGAATCTTAGCTTTCACATTGTCTATGGTATCTGAACTCTCCACCTCCAAGGTTATG 706473 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| |||||| | |||||||||||| Sbjct 706472 GTCTTTCCGGTCAAAGTTTTAACGAAAATCTGCAT 706438 >seq21071 Length=2748687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||||||| | ||| || ||| || ||||||||||| | | Sbjct 2709192 GATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCGACCATCCTCAAGCTGTTTACCCGCA 2709251 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || || || || ||||| || || ||| || ||||| Sbjct 2709252 AAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTCACG 2709311 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | |||||| || | || | || ||||| |||| |||||| Sbjct 2709312 TTATCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTC 2709371 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 2709372 ACGAAGATCTGCAT 2709385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||||||||| || | | | || || || || ||||| || || | ||| || ||| Sbjct 2708717 CAAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCTGCAAGGGTTCGTCCATC 2708776 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||||||||| | | |||| || | ||| || ||||| || || || || ||||| Sbjct 2708777 TTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTATC 2708836 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||| || ||||| | || | ||||| | |||||| || | || | || Sbjct 2708837 TTGAATCTTGGCTTTCACATTGTCTATGGTATCTGAACTCTCCACCTCCAAGGTGATGGT 2708896 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || |||| ||| || | ||||||||||||| Sbjct 2708897 CTTTCCCGTCAAAGTCTTGACGAAAATCTGCATG 2708930 >seq6459 Length=330141 Score = 89.7 bits (98), Expect = 5e-13 Identities = 239/360 (66%), Gaps = 9/360 (3%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 |||||||| || || ||| ||||| | || || ||||||||||| |||||| || Sbjct 144102 ATGCCGGGGCTCACTTTCTCAAACGAACTCATTTCTCGCGACGAAGGGCTACACTGCGAT 144161 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGA-CACGATCCT 47032 || |||||||| ||| || ||| |||| | | | ||| | || Sbjct 144162 TTCGCGTGTCTGCTCTACTCTCTGC---TGAGGCAGAAGCTCACCGAGGAGCGCGTGAGG 144218 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 ||| ||| ||||| || ||| || || ||||||| | |||| ||||||||| Sbjct 144219 GAGATTGTG-AGGGACGCCGTGGATATTGAGCGGGAGTTTGTG--TGCGACGCGCTGCCC 144275 Query 47091 GTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGAT 47150 ||| ||| |||| ||||||| | | ||| | |||| |||||||||||||| ||| Sbjct 144276 TGCGCGTTGGTGGGGATGAACGGTGATTTGATGAGTCAATACATTGAGTTTGTGGCAGAT 144335 Query 47151 CGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTT 47210 || || ||| | ||| || ||| | |||| || || ||||| || | Sbjct 144336 CGGTTGCTGGGGGCGCTTGGGTGCGGGAAGGTGTACAATGTTCAGAACCCGTTCGATTGG 144395 Query 47211 ATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 ||| | |||||||| |||| || ||||| || |||||||| || ||||| |||||| Sbjct 144396 ATGGAGCTGATTTCGCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTAT 144455 >seq22486 Length=836894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || || || ||||| || |||| Sbjct 787425 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCG 787366 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || ||||| |||||||| || || || || |||| Sbjct 787365 AAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 787306 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | |||||| || | ||| | ||||||||| || || ||||| Sbjct 787305 TTGTCGATGGTGTCCGAAGACTCCACCTCCAACGTGATCGTTTTACCCGTTAGGGTTTTC 787246 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 787245 ACGAAGATCTGCAT 787232 >seq646 Length=2337744 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| ||||| ||||| ||| | ||| | |||||||||||||| |||| Sbjct 1860352 GATTCTTTCTGAATATTGTAATCGGCGAGGGTTCTGCCGTCTTCGAGCTGTTTTCCGGCG 1860293 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||| || ||||| || |||||||| || || || || ||||| Sbjct 1860292 AAGATCAAGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGGATCTTAGCTTTCACG 1860233 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||| || || | ||| | ||||||||| || || ||||| Sbjct 1860232 TTATCGATGGTGTCAGAGGACTCGACCTCTAGCGTAATCGTTTTACCGGTTAGGGTTTTG 1860173 Query 132110 ATGAAAATCTGCATG 132124 | ||| || |||||| Sbjct 1860172 ACGAAGATTTGCATG 1860158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476413585081200