Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq7180 111 1e-19 seq646 105 6e-18 seq32646 87.8 2e-12 seq3517 84.2 2e-11 >seq7180 Length=1421306 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| |||| || ||| | |||||| | || || || || Sbjct 1038824 CATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACAATCACGCTAGAGGTGGAGTCCTC 1038883 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || ||||| | || ||| || ||| ||||| || || || || || ||||| Sbjct 1038884 CGACACAATCGATAACGTGAAAGCCAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCA 1038943 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | || | || ||| |||||||||||||| | |||| || ||||||||| Sbjct 1038944 GCAACGTTTGATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACCCTCGCCGATTACAA 1039003 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||| || |||||||| || | ||||| ||| Sbjct 1039004 TATCCAGAAAGAATCGACTCTGCATTTGGTG 1039034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||||| ||| |||| ||| | || || || || Sbjct 1039053 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATTACGCTAGAGGTAGAGTCCTCT 1039112 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| || || ||||| || ||||| || || |||||| Sbjct 1039113 GACACAATCGATAACGTGAAAGCGAAGATCCAGGATAAGGAAGGTATTCCACCGGATCAG 1039172 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | || ||| || || | ||||| | |||| | |||||||||| Sbjct 1039173 CAACGTCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGAACCCTTGCCGATTACAAT 1039232 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||||| ||||| || ||||| | ||| Sbjct 1039233 ATTCAAAAGGAATCGACGCTTCATCTGGTG 1039262 >seq646 Length=2337744 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| ||||||| ||| |||| ||| | || ||||| | Sbjct 1859927 CAATATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTC 1859986 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||| || ||||| | || ||| ||||| || || || || || || || || Sbjct 1859987 CTCCGACACAATCGATAACGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCACCGGA 1860046 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||| | | || | || ||| |||||||||||||| | |||| | || |||||| Sbjct 1860047 TCAGCAGCGTTTGATCTTCGCCGGTAAACAACTCGAAGACGGCAGAACTCTCGCCGATTA 1860106 Query 25351 CAATATTCAAAAAGAATCCAC 25371 |||||| || |||||||| || Sbjct 1860107 CAATATCCAGAAAGAATCGAC 1860127 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| ||||||| ||| |||| ||| | || ||||| || Sbjct 1860158 CATGCAAATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTCCTC 1860217 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| || || || || || || || || || || || Sbjct 1860218 TGACACCATCGATAACGTGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCACCAGACCA 1860277 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | || ||| ||||| |||||||| | |||| || ||||||||| Sbjct 1860278 GCAGCGCTTGATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGATTACAA 1860337 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||| |||||||| || ||||| | ||| Sbjct 1860338 TATTCAGAAAGAATCGACGCTTCATCTGGTG 1860368 >seq32646 Length=539585 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || || | || || | || || ||| | Sbjct 529049 ATGCAAATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 528990 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| || ||| || || |||||||| || || |||||| Sbjct 528989 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCTCCAGATCAG 528930 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||||| ||||||| | || | ||| | ||||||| | | | || ||| |||||| Sbjct 528929 CAAAGGCTCATTTTTGCTGGGAGGCAATTAGAAGATGGTCGTACCTTGGCAG--ATTACA 528872 Query 25353 ATATTCAAAAAGAATCCACCATTCAT 25378 ||||||| || ||||||||||| ||| Sbjct 528871 ATATTCAGAAGGAATCCACCATGCAT 528846 >seq3517 Length=1029689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || || || |||||| | || || | || || ||| Sbjct 702264 CATGCAAATCTTTGTTAAGACTTTGACTGGAAAAACCATAACTTTGGAGGTTGAAAGTTC 702323 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || ||| ||| || || ||||| || || || ||||| Sbjct 702324 TGATACCATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCTGATCA 702383 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| || || |||| | || || ||||| ||||||| | | | || ||| ||||| Sbjct 702384 GCAGAGGCTTATTTTTGCTGGGAAGCAACTGGAAGATGGTCGTACCTTGGCAG--ATTAC 702441 Query 25352 AATATTCAAAAAGAATCCACCATTCAT 25378 |||||||| || ||||||||| | ||| Sbjct 702442 AATATTCAGAAGGAATCCACCTTGCAT 702468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444909852734400