Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13074 114 2e-20 seq10089 111 2e-19 seq20448 105 9e-18 seq27061 93.3 6e-14 seq25784 86.0 9e-12 >seq13074 Length=2244089 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 1143524 TCCCCCCTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACC 1143583 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||| |||| || |||| ||||| ||| | || |||| || |||| Sbjct 1143584 ATTTGATGTCCCAGTTGTGGCACAAATGTAACTGCCTGTGGCATGAATGTTGTGAATACT 1143643 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||||||||| ||| || | | |||| ||||| ||||||||||| Sbjct 1143644 AACACCAATTCCTCCTGCTGATTTGCTAATGACAACACACTCCTTCAAAGTGTCATATAT 1143703 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||||| |||| |||| ||||| | ||| || || ||| Sbjct 1143704 TCCCTCTATACTATAATCTTTCATGCACACAAGGAAGCAACTA 1143746 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||||||| |||| |||||| |||||||| || | | | |||||||| || || Sbjct 1141684 TAAAACTCTACGACTGTAGATATTAGAAGTATATGGCTCAAAACACTCATTATTGCCAAG 1141743 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAA 68831 ||| || ||||||||||||||||||||| || || || Sbjct 1141744 AATCTGGCAAGTTGATGCAGTTGGCATAGGGGCAACAAA 1141782 >seq10089 Length=680993 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | ||| |||||||| |||||||||||| | | ||| | || | | Sbjct 148585 GTTCCTGCATTGAAAAGTGTTGGAGATGCATGAGTGAACCATCTCTGAGACATCATGTGG 148644 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||| | ||| || || || || || ||||||||| | || || | ||||||| Sbjct 148645 TATGTTCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATCAAC 148704 Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || |||||||| | ||| || | ||| | | | ||||| |||||||| | || | Sbjct 148705 ATGTGCTGAGGCCTTTCCACAACCTTTCCT--TGAACCTTCAAGAGGTATGACCTCTCAA 148762 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||||| || ||||| || | || |||||| || || || || || Sbjct 148763 GAGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATAGATTAT 148811 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | || | || | |||||| |||| |||||| Sbjct 148211 TCCCCCTTGATCAACATAGCGAGCAGTATCGTTGAACACACGCAGCATTGGAACAATACC 148270 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| || ||||||||| | || ||||| || || | Sbjct 148271 ATTTGATGTCCCATTTGTGCCACGGATGTAACTTCCTGTGGCACGAATGTTGTGAACACT 148330 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | ||||| ||||| ||||||||||| Sbjct 148331 AACACCAATTCCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAAAGTGTCATATAT 148390 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||||| ||||||||| ||||| | ||| || || ||| Sbjct 148391 TCCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 148433 >seq20448 Length=1126904 Score = 105 bits (116), Expect = 9e-18 Identities = 231/341 (68%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || |||||||| || || || |||||||||| || | |||||| || || ||||| Sbjct 920638 CACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGC 920579 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAA 39735 || ||||||| |||||||| |||||||||||||| || ||| ||| ||| || ||||| Sbjct 920578 CCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCGGAGAAGAA 920520 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTATGTA 39794 || || || || || ||||| || || | ||| || || | | | || | Sbjct 920519 TATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCG-AAGGATTCTGAGGCATCGA 920461 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| | ||||| | ||||| || | | || || || || | ||| || || Sbjct 920460 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 920401 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 | ||| || |||||| ||||| | || || |||| | || || ||||||| Sbjct 920400 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 920341 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 | || ||||| ||||| || || || || || ||||| ||| Sbjct 920340 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 920300 >seq27061 Length=934220 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||||||| |||| ||||| ||||||||||| | | | ||||||||||| || Sbjct 846554 TAAAACTCTACGACTGTAGATATTTGAAGTATATGGTTCAAAACACTCATTATTTCCAAG 846613 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| || ||| ||||||||||||||||| ||||| Sbjct 846614 AATCTGGCTAGTGGATGCAGTTGGCATAGGGGCCAC 846649 >seq25784 Length=99802 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| |||||||| || || ||||| | |||| ||| || || || |||||| Sbjct 38531 CAAGCGAAATCACAATGAAGACCTTCATCGCGTGATATTAGTTCATTTGAGAAAGTGAGT 38590 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAA 39735 || ||||| || ||||| ||||||||||| || | || ||| ||| ||| || ||||| Sbjct 38591 CCGGGCATGAGTCCACGTTTTTTGAGCCAGAAGACAGC-GCAGAAGCTTCCGGAGAAGAA 38649 Query 39736 GATGCCTTC 39744 ||| ||||| Sbjct 38650 GATACCTTC 38658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686623990438800