Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq20448 100 2e-16 seq30896 82.4 6e-11 >seq20448 Length=1126904 Score = 100 bits (110), Expect = 2e-16 Identities = 249/370 (67%), Gaps = 6/370 (2%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||| | ||| | || || || || ||| || || || ||||| ||||| ||||||| Sbjct 920272 AAGAAATCCAACTCCCGGAGGCCCGCGCTTTCTACGGCTTCCAAATCGCCATCGAAAATA 920331 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA-TGGGCACGAGAAG 44032 | || || ||||||||||| || || |||| || ||||||||||| | || || || Sbjct 920332 TCCACTCCGAAATGTACAGCCTCCTCTTAGAAACCTACATCAAAGACTCCACA-GAAAAA 920390 Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGC 44091 |||| ||||| || ||| | || | || ||| || | | ||||| | ||||| Sbjct 920391 AATCGTCTGTTTCGCGCCATAAACACCATCCCATGC-ATCACCAAAAAAGCCCAGTGGGC 920449 Query 44092 CCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 ||| ||||| || | || || || | || || || || || || || || Sbjct 920450 CCTCCGCTGGATCGATGCCTCAGAATCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGT 920509 Query 44152 GGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 || || || ||||| || || | | | ||| || ||||||||| | ||||| || || | Sbjct 920510 CGAGGGAATATTCTTCTCCGGAAGCTTCTGC-GCGATATTTTGGCTCAAGAAGCGTGGGT 920568 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 | ||||| ||| | || || || || || | || || ||||| || | || |||| Sbjct 920569 TAATGCCGGGGCTCACCTTCTCCAACGAACTCATCTCGCGAGATGAGGGGCTTCACTGCG 920628 Query 44271 ATTTTGCTTG 44280 | || || || Sbjct 920629 ACTTCGCGTG 920638 >seq30896 Length=1964275 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||| ||| | || || |||| |||||||| || ||||| || ||||||||| || Sbjct 1739071 GCCATATTCTGGCTTAAAAAGAGAGGATTGATGCCAGGTTTGACATTCTCAAATGAGCTA 1739130 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || | | ||||| ||| | ||||| ||||||||||| Sbjct 1739131 ATCTCTAGAGATGAGGGCCTTCATTGTGATTTTGCTTG 1739168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397295324685850