Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10089 114 2e-20 seq1145 111 2e-19 seq27061 105 8e-18 seq26036 104 3e-17 seq20448 104 3e-17 seq14584 104 3e-17 seq14952 100 4e-16 seq10803 87.8 2e-12 seq23236 86.0 8e-12 seq19384 86.0 8e-12 seq13074 84.2 3e-11 seq25784 82.4 1e-10 seq10397 82.4 1e-10 >seq10089 Length=680993 Score = 114 bits (126), Expect = 2e-20 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || || ||||| || |||||||| || ||||| | ||| ||| ||||| | || Sbjct 148572 CTGAGGCCTAGGTGTTCCTGCATTGAAAAGTGTTGGAGATGCATGAGTGAACCATCTCTG 148631 Query 112000 GGACATCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 |||||| ||| |||||| || | | ||||||||||||| ||| || || || | | Sbjct 148632 AGACATCATGTGGTATGT-TCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAG 148690 Query 112059 CGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA- 112117 | |||| ||| ||||||| ||| || |||||| | | || | || || || |||| Sbjct 148691 CAACCCTCATCAACATGTGCTGAGGCCTTTCCACAACCTTTCC-TTGAACC-TTCAAGAG 148748 Query 112118 -TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || | ||||||| ||||||| |||||||||| || | ||| |||||| Sbjct 148749 GTATGACCTCTCAAGAGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCC 148798 >seq1145 Length=872046 Score = 111 bits (122), Expect = 2e-19 Identities = 211/307 (69%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || || | ||||| || ||||| || | || || || | | ||||| Sbjct 257077 ATCAAGAATGTCAACCCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAA 257136 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | |||||| | || |||||||| |||||||| || Sbjct 257137 TCCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC--- 257193 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| |||| || | |||| | || || |||||||| ||||||| || ||||| || Sbjct 257194 ACCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 257253 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 ||| ||| || ||| | || | |||||| || | ||||| |||||||| Sbjct 257254 TGGGGCATTCTCTTTGGCCTTCCTGAATAAATCGCGGACTCGAGAAGCACCAACACCAAC 257313 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCG 11777 ||||||||| ||||| | | | ||| | || || ||||||||| || |||||| | Sbjct 257314 AAACATCTCTACAAACTCAGAACCTGAG-ATTGAGAAAAATGGGACACCTGCTTCACCTG 257372 Query 11778 CGATGGC 11784 | || || Sbjct 257373 CAATAGC 257379 >seq27061 Length=934220 Score = 105 bits (116), Expect = 8e-18 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || ||||| ||||||||||| || || || | ||| ||| | ||| | ||| Sbjct 848878 TGAGGCCTAGGTGTTCCAGCATTGAAAAGTGTCGGAGATGCATGAGTAAACCATCGTTGA 848937 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| |||||| | | | ||||||| ||||| ||| ||| || || | || Sbjct 848938 GACATCATGTGGTATGTTTTGATGGCAGAATCTATGTCATCCTTGTGAATCCCAACAGCA 848997 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| ||||||| || || |||||| | | || | || || || |||| | Sbjct 848998 ACCCTCATCAACATGTGTTGAGGCCTTTCCA-CAACCTTCCCTTGAACC-TTCAAGAGGT 849055 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | ||||||||||||||| ||||| ||| || | ||| |||| Sbjct 849056 AAGACCTCTCAAGGGTTTTGAATCCAAAATAATCATAGTCAAAGTC 849101 >seq26036 Length=1795852 Score = 104 bits (114), Expect = 3e-17 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || ||||| ||||||||||| || || || | ||| || ||||| | ||| Sbjct 176180 TGAGGCCTAGGTGTTCCAGCATTGAAAAGTGTCGGAGATGCATGGGTGAACCATCGTTGA 176239 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| ||| || | | ||||||| ||||| ||| ||| || || | || Sbjct 176240 GACATCATGTGGTAAGTTTTGACAGCAGAATCTATGTCATCCTTGTGAATCCCAACAGCA 176299 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| ||||||| || || |||||| | |||| | || || || |||| | Sbjct 176300 ACCCTCATCAACATGTGTTGAGGCCTTTCCA-AAACCTGCCCTTGAACC-TTCAAGAGGT 176357 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | ||||||||||||||| ||||| ||| || | ||| |||||| Sbjct 176358 AAGACCTCTCAAGGGTTTTGAATCCAAAATAATCATAGTCAAAGTCCC 176405 >seq20448 Length=1126904 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||||||||| || || ||||| || |||||| || || ||||| | || Sbjct 920624 GTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGCCCCGGCATTAACCC 920565 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | |||| | || |||||||| ||||||||||| || ||||| || || Sbjct 920564 ACGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAATATTCCCTCGACGCA 920505 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || || | ||||| || |||||||| Sbjct 920504 AGCGAATGCCACGAGGCGCTCCGCGAAGGA 920475 >seq14584 Length=1259196 Score = 104 bits (114), Expect = 3e-17 Identities = 207/304 (68%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || || | ||||| || ||||| || | || || || | | ||||| Sbjct 1202351 ATCAAGAATGTCAACTCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAA 1202292 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | |||||| | || |||||||| |||||||| || Sbjct 1202291 TCCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCCGCC 1202232 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | |||| || | |||| | || || |||||||| ||||||| || ||||| ||||| Sbjct 1202231 AATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCATGG 1202172 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 ||| || ||| | || | ||| || || | ||||| ||||||||||| Sbjct 1202171 AGCATTCTCTTTGGCCTTCCTGAATAAATCACGGACTCGAGAAGCACCAACACCAACAAA 1202112 Query 11722 CATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGA 11780 |||||| ||||| | | | ||| | || || ||||||||| || |||||| || | Sbjct 1202111 CATCTCTACAAACTCAGAACCTGAG-ATTGAGAAAAATGGGACACCTGCTTCACCTGCAA 1202053 Query 11781 TGGC 11784 | || Sbjct 1202052 TAGC 1202049 >seq14952 Length=1323296 Score = 100 bits (110), Expect = 4e-16 Identities = 319/491 (65%), Gaps = 8/491 (2%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| |||||||| | | | ||| ||||| || || | | ||||| || || Sbjct 651806 ATCAAACCGACCCGGTCTCAATAAGGCAGAGTCAAGAATGTCAGCCCTGTTAGTTGCTGC 651865 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 || || | || ||||| | | ||||| |||||||| || || | | ||| || | Sbjct 651866 AACGACAATGATACCAGTGTTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 651925 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCCAC 11628 || || ||||| |||||||| || |||| |||| | | ||| | || || Sbjct 651926 GGTCTGCTCTCTTTCATCATTCCCTCC---ACCAATTCCAGTCCCTCTTTGTCTTCCAAC 651982 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 |||||||| ||||||| |||||||| || || ||| || ||| | | || | Sbjct 651983 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGCCTTCTTGAACAA 652042 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 ||| ||||| | ||||| ||||||||||||||||| ||||| | | | || | Sbjct 652043 ATCACGAACACGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTGA-TA 652101 Query 11749 CTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || || ||||| ||| | |||||| || || || ||| | || ||||| || | Sbjct 652102 TTGAGAAAAATGGAACACCAGCTTCACCAGCAATAGCCTTGGCTAACAGTGTCTTCCCAG 652161 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 | ||||| ||| | ||||| | ||| || || || ||| || | | Sbjct 652162 TTCCTGGAGGACCAACAAGAAGAACTCCTTTCGGTATGCGAGCCCCAACAGCAGTGAACC 652221 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927 |||| || | ||| ||||| ||||||| ||| || || | ||||| | || | || Sbjct 652222 TCTCAGGCTTCTTTAGAAACTCCACAACCTCCATAAAGTCCTGCTTGGCTTCATCCACCC 652281 Query 11928 CCTCAACATCA 11938 | |||||||| Sbjct 652282 CAGCAACATCA 652292 >seq10803 Length=354954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || || | ||| || ||||||||||| || || | |||||| |||||| || ||| Sbjct 196045 GCGAAGTCGTAGTGAAGCCCCTCATCTCGCGAGATGAATTCATTGGAGAAGGTGAGCCCT 196104 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 | ||| | || |||||||| | |||| | || |||||||| |||||||||| || Sbjct 196105 GACATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTTCGGAGAAGAATATT 196164 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || | || || | || || | ||||| || |||||||| Sbjct 196165 CCTTAGACGCAAGAGAATGCCATGAGGCGCTCCGCGAAGGA 196205 >seq23236 Length=1287353 Score = 86.0 bits (94), Expect = 8e-12 Identities = 241/364 (66%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG- 11598 || |||||||| || ||||| || ||||| | |||||| || || |||||||| || Sbjct 774141 AAACCATCCATTTCAGTGAGCAACTGATTCAGTGTTTGCTCCCTTTCATCATTCCCTCCA 774082 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | || ||| | || | ||| | || || ||||| |||||||||||||| | | ||| Sbjct 774081 CCTAT-ACCTGTACCTCTCTGCCTCCCTACAGCATCTATCTCATCAATGAATATCAGACA 774023 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || ||||| || | | ||| | ||| | |||||| ||| || ||||| || Sbjct 774022 AGGAGAATTTTGTTTTGCCTTGTTAAACAAATCCCTCACCCTTGAGGCCCCTACACCCAC 773963 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| | || | || |||| | ||| || || | || || || Sbjct 773962 AAACATCTCAATGAACTCTGATCCAGATAGGGAAAAGAAAGGAACCCCAGCCTCTCCTGC 773903 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 || || ||| || | |||||||| || ||||| || | ||||| | ||| Sbjct 773902 AATTGCCTTGGCCAGCAATGTCTTTCCAGTCCCTGGTGGCCCTACCAGAAGTACCCCTTT 773843 Query 11839 GGGGATCTTGGCACC-ACTTC-CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 ||| || || || || ||| | |||| ||||| |||| ||| | || || |||||| Sbjct 773842 GGGAATTTTTGCTCCAACTGCAGAAAACTTCTCTGGGGT--CTTCAAGAACTCAACAATC 773785 Query 11897 TCTT 11900 |||| Sbjct 773784 TCTT 773781 >seq19384 Length=1547856 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| | |||| | |||||||| || | ||| | || |||| | | ||| Sbjct 1452030 ATCAAGAACATCCGGTCTGTTAGTGGCAGCCAAAACAATAACACCAGAATTACCAGAAAA 1452089 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGC-TGGCA 11600 ||||||||||| || || | |||||||| |||||||| |||||||||||| | | Sbjct 1452090 CCCATCCATCTCAGTAAGAAGCTGATTAATAGTTTGTTCCCTCTCATCATTTCCACCTCC 1452149 Query 11601 TACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 || | || || | | ||| | || || || ||||||||||||||||| ||||| || | Sbjct 1452150 TAGC-CCCGCCCCTCTCTGCCTCCCAACGGCGTCAATCTCATCAATGAAAACAATGCACG 1452208 Query 11661 G 11661 | Sbjct 1452209 G 1452209 >seq13074 Length=2244089 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/228 (70%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || || ||||| | | |||||| || ||||| | ||| ||| | ||| | || Sbjct 1143884 CTGAGGCCTAGGTGTTCT-GTATTGAAAAGTGTTGGAGATGCATGAGTAAACCATCTCTG 1143942 Query 112000 GGACATCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 |||||| ||| ||| || || | | ||||||||||||| ||| || || || | Sbjct 1143943 AGACATCATGTGGTAAGT-TCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAA 1144001 Query 112059 CGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA- 112117 | |||| ||| ||||||| ||| || |||||| | | || | || || || | || Sbjct 1144002 CAACCCTCATCAACATGTGCTGAGGCCTTTCCACAACCTTTCC-TTGAACC-TTCAGGAT 1144059 Query 112118 -TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 || | ||||||||||||||| |||||||||| || | ||| |||| Sbjct 1144060 GTATGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 1144107 >seq25784 Length=99802 Score = 82.4 bits (90), Expect = 1e-10 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || ||||| ||||| || || || |||||||||||||| || || |||||||| || Sbjct 38546 TGAAGACCTTCATCGCGTGATATTAGTTCATTTGAGAAAGTGAGTCCGGGCATGAGTCCA 38605 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 || || || | ||| | | ||||||||| ||||||||||||||||| || Sbjct 38606 CGTTTTTTGAGCCAGAAGACAGCGCAGAAGCTTCCGGAGAAGAAGATACCTTC 38658 >seq10397 Length=801917 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346 ||| |||||||||| | |||||||||||||||||||| ||||| | ||| ||||||||| Sbjct 743067 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAGCAACCTGGATTCGAATCCAGGT 743008 Query 145347 AGGAGCTT 145354 |||| ||| Sbjct 743007 AGGACCTT 743000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627771602232000