Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq20448 131 2e-25 seq14584 114 2e-20 seq1145 114 2e-20 seq3485 95.1 1e-14 seq14952 93.3 5e-14 seq32773 86.0 8e-12 seq13141 84.2 3e-11 >seq20448 Length=1126904 Score = 131 bits (144), Expect = 2e-25 Identities = 384/579 (66%), Gaps = 17/579 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCAT 129786 || |||||||| |||||||| |||||||| || ||||| | |||| | || |||||| Sbjct 920923 TACTCCCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTG-AAGCGAAATAAGCTCCAT 920865 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC-ACTCC-AATCTGTTTGAGGAGA 129844 ||||||| || |||| ||| || | || | || || || | | || | Sbjct 920864 CCAATCAAAGGGATTCT--GAGCACCGTACACCTTCCCACACCCAAGCGCATCCAGCAAC 920807 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 ||||||| || ||||||| ||| | |||| ||| |||||| || | | | Sbjct 920806 CGATCCGCAACAAACTCAATATACCGACTCATCAACTCCCCGTTCATCCCCACCAACGCA 920747 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || |||||||| | | ||| || ||||||| ||||| || || ||||| || | Sbjct 920746 CACGGAAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCGTCACGCACAATCTCC 920687 Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTG---AAGAGTTCCACGGCAAAC 130021 | | |||| | | | | || | | | | | ||||| |||| | || Sbjct 920686 CTCACGCGCTCCTCACTAAGCTTCTTCCTGAGAAGCGAGTACAAGAGA--CACG-CGAAG 920630 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| || ||||| || || ||||||||||| || |||||| || || ||||| Sbjct 920629 TCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGCCCCGGCATT 920570 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 | || |||||||| | ||| || ||||| || || || |||||||| || ||||| Sbjct 920569 AACCCACGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAATATTCCCTCG 920510 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 130201 || || ||||| || | ||| ||||| || ||||| || | ||| | ||| Sbjct 920509 ACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGA---GGCATCGATCCAGCGG 920453 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261 | |||||||| || ||||| ||| || |||| ||| | || || ||| || Sbjct 920452 AGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAAACAGACGA 920393 Query 130262 TTCTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAG 130299 || ||||||| |||| ||||||||||| | |||| ||| Sbjct 920392 TTTTTTTCTG-TGGAGTCTTTGATGTAGGTTTCTAAGAG 920355 >seq14584 Length=1259196 Score = 114 bits (126), Expect = 2e-20 Identities = 182/256 (71%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| || |||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 1202350 TCAAGAATGTCAACTCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 1202291 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAG-GC-- 14212 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | || Sbjct 1202290 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCCGCCA 1202231 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 || ||| | || | |||| | || || || ||||||||||| | ||||| || ||| Sbjct 1202230 ATTCCA---GTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 1202174 Query 14273 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 1202173 GGAGCATTCTCTTTGGC--CTTCCTGAATAAATCACGGACTCGAGAAGCACCAACACCAA 1202116 Query 14331 CAAACATCTCCACAAA 14346 |||||||||| ||||| Sbjct 1202115 CAAACATCTCTACAAA 1202100 >seq1145 Length=872046 Score = 114 bits (126), Expect = 2e-20 Identities = 181/256 (71%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| || |||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 257078 TCAAGAATGTCAACCCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 257137 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | | Sbjct 257138 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 257194 Query 14216 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 ||| || | || | |||| | || || || ||||||||||| | ||||| || ||| Sbjct 257195 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 257254 Query 14273 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 257255 GGGGCATTCTCTTTGGC--CTTCCTGAATAAATCGCGGACTCGAGAAGCACCAACACCAA 257312 Query 14331 CAAACATCTCCACAAA 14346 |||||||||| ||||| Sbjct 257313 CAAACATCTCTACAAA 257328 >seq3485 Length=314948 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 180848 CGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 180907 ||||| |||||||| || ||||||| || | ||||||||| || || |||||||| | Sbjct 173414 CGATGACAAACTCCGTGGAGAAGATGTTAGTGAGCTTGGCACCATAACCGTTGCGTCCGC 173355 Query 180908 CAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAAGGTAA 180967 | | | |||||| |||||||| |||||| | || ||||||||||| || ||| | | Sbjct 173354 CGGTAGTCTTCTTCTCGTTGTCATTGTAGTTGCTGCTGGTGAGGAGGTGGCCGAAGATGA 173295 Query 180968 GTTCTGG 180974 |||| || Sbjct 173294 GTTCGGG 173288 >seq14952 Length=1323296 Score = 93.3 bits (102), Expect = 5e-14 Identities = 249/372 (67%), Gaps = 18/372 (5%) Strand=Plus/Plus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| ||||| || | | | ||| |||||| || ||| | ||| || || || Sbjct 651806 ATCAAACCGACCCGGTCTCAATAAGGCAGAGTCAAGAATGTCAGCCCTGTTAGTTGCTGC 651865 Query 14125 GATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 | ||||| ||| || || |||| ||||| |||||||| || ||||| ||||| || Sbjct 651866 AACGACAATGATACCAGT---GTTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTT 651922 Query 14182 GATGGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTACC 14238 || ||| || || | |||||||||| | | || ||| | | || || ||| || Sbjct 651923 GAGGGTCTGCTCTCTTTCATCATTCCCTCCACCAATTCCAGTCCCTCTTTGT--CTT-CC 651979 Query 14239 GACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA-- 14296 || || ||||||||||| | || || || || || ||| || ||| |||| Sbjct 651980 AACAGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTG 652037 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | ||| || || | ||||| ||||| ||||||||||| ||||| | | | Sbjct 652038 AACAAATCACGAACACGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCT 652097 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 | | |||| || || || || || |||||| || || || ||| | || ||||| Sbjct 652098 G-ATATTGAGAAAAATGGAACACCAGCTTCACCAGCAATAGCCTTGGCTAACAGTGTCTT 652156 Query 14416 CCCCGTCCCTGG 14427 ||| || ||||| Sbjct 652157 CCCAGTTCCTGG 652168 >seq32773 Length=474742 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 180848 CGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 180907 ||||| ||||| | || ||||||| || | |||||| || ||||| |||||||| | Sbjct 292856 CGATGACGAACTCAGTCGAGAAGATGTTGGTGAGCTTGGCGCCATAGCCGTTGCGTCCCC 292797 Query 180908 CAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAAGGTAA 180967 | | | |||||| |||||| | |||||| | || ||||||||||| |||||| | | Sbjct 292796 CGGTAGTCTTCTTCTCGTTGTCGTTGTAGTTACTGCTGGTGAGGAGGTGGCCAAAGATGA 292737 Query 180968 GTTCTGG 180974 |||| || Sbjct 292736 GTTCGGG 292730 >seq13141 Length=895435 Score = 84.2 bits (92), Expect = 3e-11 Identities = 229/342 (67%), Gaps = 18/342 (5%) Strand=Plus/Minus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 14151 |||||| || ||| | ||| || || || | ||||| ||| || || |||| || Sbjct 579368 GTCAAGAATGTCAGCCCTGTTAGTTGCTGCAACGACAATGATACCTGT---GTTACCCTC 579312 Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGC--- 14208 ||| |||||||| || ||||| ||||| |||| ||| || || | |||||||||| | Sbjct 579311 AAACCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCTCC 579252 Query 14209 AGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | || ||| | | || || ||| || || || ||||||||||| | || || || Sbjct 579251 ACCAATTCCAGTCCCTCTTTGT--CTT-CCAACAGCATCAATTTCATCAACAAAGACAAT 579195 Query 14269 ACATGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACA 14326 || || ||| || ||| |||| || | ||| || || | ||||| ||| Sbjct 579194 GCAAGGGGCATTCTCTTTGGC--CTTCTTGAACAAATCACGAACACGAGAAGCACCAACA 579137 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385 || ||||||||||| ||||| | | | | | || | || || || || || ||| Sbjct 579136 CCAACAAACATCTCAACAAACTCAGAACCTG-ATATAGAGAAAAATGGAACACCAGCTTC 579078 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||| || || || ||| | | ||||||||| || ||||| Sbjct 579077 ACCAGCAATAGCCTTGGCTAACAAGGTCTTCCCAGTTCCTGG 579036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618178781305200