Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq20448 140 4e-28 seq6459 111 2e-19 seq25784 89.7 6e-13 >seq20448 Length=1126904 Score = 140 bits (154), Expect = 4e-28 Identities = 353/529 (67%), Gaps = 6/529 (1%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 ||||||||||||| | || |||||| | | |||||| | |||||| | |||| Sbjct 920098 TGTATAAGAAAGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTCTCGCAGGACC 920157 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | |||| || |||| ||| ||||| || ||||||| ||||| |||| Sbjct 920158 TCCGCCACTGGGCCACCCTCAGCGACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCT 920217 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 ||||||| || || || || || | ||||| | | | ||| |||| || Sbjct 920218 TCTTCGCCGCCTCCGACGGCATCGTCCTAGAAAACCTCGCCGGCCGCTTCACCAAAGAAA 920277 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 |||| | | |||||||| | ||||||| | || ||| || ||| ||||||| Sbjct 920278 TCCAACTCCCGGAGGCCCGCGCTTTCTACGGCTTCCAAATCGC-CATCGAAAATATCCAC 920336 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 ||||| | |||| ||| | | || | | |||| || | ||| || | || Sbjct 920337 TCCGAAATGTACAGCCTCCTCTTAGAAACCTACATCAAAGACTCCACAGAAAAAAATCGT 920396 Query 59892 CTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 ||||| || |||||| | || |||| ||| | | ||||||| | |||||| | | Sbjct 920397 CTGTTTCGCGCCATAAACACCATCCCATGCA-TCACCAAAAAAGCCCAGTGGGCCCTCCG 920455 Query 59951 GTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAG 60009 ||||| || ||| || ||| || || | || ||| | || || || ||||| || | Sbjct 920456 CTGGATCGATGCCTC-AGAATCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGTCGAGG 920514 Query 60010 GAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069 |||| |||||||| || ||||| || || || |||||||| |||||||| | |||| Sbjct 920515 GAATATTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTCAAGAAGCGTGGGTTAATGC 920574 Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || | ||||||||||| || || || || || ||||| || || Sbjct 920575 CGGGGCTCACCTTCTCCAACGAACTCATCTCGCGAGATGAGGGGCTTCA 920623 >seq6459 Length=330141 Score = 111 bits (122), Expect = 2e-19 Identities = 285/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 |||| || ||||||||||| ||||| ||||| |||||||||||||| || || |||| Sbjct 144043 AAGGTATTTTCTTCTCTGGAAGCTTCTGCGCTATCTTCTGGCTCAAAAAACGAGGACTCA 144102 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126 ||||||| || | |||||| ||||| || ||||| || ||||| || || || || | Sbjct 144103 TGCCGGGGCTCACTTTCTCAAACGAACTCATTTCTCGCGACGAAGGGCTACACTGCGATT 144162 Query 60127 TTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TATTCAC 60182 | || ||| | |||||| || | || | | || || | || |||| | Sbjct 144163 TCGC-GTGTCTGCTCTACTCTCTGCTGAGGCAGAA--GCTC-ACCGAGGAGCGCGTGAGG 144218 Query 60183 AAGATTGTTCAGTG--GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCAT 60240 |||||| | || | | | || || | ||| | ||||| | || ||||| || | Sbjct 144219 GAGATTG-TGAGGGACGCCGTG-GATATTGAGCGGGAGTTTGTGTGCGACGCGCTGCCCT 144276 Query 60241 GCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACC 60300 || | | || ||| ||| || |||| || |||||| ||||||| || || | Sbjct 144277 GCGCGTTGGTGGGGATGAACGGTGATTTGATGAGTCAATACATTGAGTTTGTGGCAGATC 144336 Query 60301 GCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGA 60360 | | ||| | |||| || | ||| || | ||||| ||||| |||| Sbjct 144337 GGTTGCTGGGGGCGCTTGGGTGCGGGAAGGTGTACAATGTTCAGAACCCGTTCGATTGGA 144396 Query 60361 TGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTATT 60420 ||||| || ||| || | || |||||||||||||| |||||||| |||||||| ||| Sbjct 144397 TGGAGCTGATTTCGCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTATC 144456 Query 60421 CAAAG 60425 |||| Sbjct 144457 AAAAG 144461 >seq25784 Length=99802 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 ||||| ||||||||||| || ||||| ||| | |||||||||||||| ||||| ||| Sbjct 38658 GAAGGTATCTTCTTCTCCGGAAGCTTCTGCGCTGTCTTCTGGCTCAAAAAACGTGGACTC 38599 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 ||||| || || | |||||| || || || || || || || || || || ||| Sbjct 38598 ATGCCCGGACTCACTTTCTCAAATGAACTAATATCACGCGATGAAGGTCTTCAT 38545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548297367904800