Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq24624 446 2e-120 seq32525 295 8e-75 seq29915 286 4e-72 seq6217 136 5e-27 seq5765 132 6e-26 >seq24624 Length=74067 Score = 446 bits (494), Expect = 2e-120 Identities = 630/884 (71%), Gaps = 6/884 (1%) Strand=Plus/Minus Query 176218 TTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTA 176277 |||||||| || || | || ||||| || |||||||| || || || | ||||||||| Sbjct 18437 TTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTA 18378 Query 176278 CTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTA 176337 || ||||||||||| ||||| || || || | | || | || || || || | Sbjct 18377 CTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTG 18318 Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 ||||| || || || |||||||| ||| | ||||| |||||| | || || || || || Sbjct 18317 CACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAACGGCGGTCCT 18258 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAA 176454 || |||| || | | |||||| | | ||| | ||||| ||||||| || | Sbjct 18257 TATGAACTAATTATTCTACACTTCTTACTTGGTGT---AGCTTGCTACATGGGGCGTGAG 18201 Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 ||||||||||||| | | || |||||||||||||| ||||||||| || || || Sbjct 18200 TGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 18141 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || | || || | || |||||| | ||||||| | ||||| ||| || || ||| Sbjct 18140 GTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGAT 18081 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 ||||||||||| || ||||||||||| | ||| |||||| ||||||| || || |||| Sbjct 18080 GGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAGGCTAAGCAT 18021 Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 || ||||| ||||| ||||| || ||| | | ||||| ||||| || || || || | Sbjct 18020 AATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGCGGCTCCTTA 17961 Query 176695 TTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAAC 176754 ||| || ||||| || | || |||||| | | || || || || ||||| Sbjct 17960 TTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 17901 Query 176755 GAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCT 176814 ||||| || | ||||||| ||| || ||||| ||||| || || || ||||||||| Sbjct 17900 GAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCT 17841 Query 176815 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGT 176874 || || ||||| ||||| || | |||||||| ||||| |||||| || || | | Sbjct 17840 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCT 17781 Query 176875 CTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTT 176934 | || |||||| | || || | || || || | || |||||||| || | ||| | Sbjct 17780 TTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATC 17721 Query 176935 TGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCT 176994 |||| ||||| |||||| | || |||||||| |||||||| || || | || | Sbjct 17720 AGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAA 17661 Query 176995 GGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTT 177054 ||| || ||| ||| |||| ||||| ||||||| || ||||||||||||||||| Sbjct 17660 GGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTA 17601 Query 177055 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGC 177098 ||||| || ||||||||||| || ||||| || || || ||||| Sbjct 17600 ATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGC 17557 >seq32525 Length=219324 Score = 295 bits (326), Expect = 8e-75 Identities = 458/648 (71%), Gaps = 10/648 (2%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | |||||||| | | | || || | | ||| Sbjct 125597 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTA 125655 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || |||||||| || || || || ||||| || |||||||| || || || Sbjct 125656 TTTATTATCGCTTTTATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 125715 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| ||||| || || || | | || | || Sbjct 125716 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 125775 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| || || || |||| ||| ||| | ||||| |||||| | ||| Sbjct 125776 GCTATAGGTTTGCACTTTTATCCTATTTGGGGAGCGGCATCTGTTGATGAATGGTTATAC 125835 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---AC 176442 || || || || || |||| |||| | |||||| | | ||| | ||||| || Sbjct 125836 AACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTAC 125892 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 ||||| || | ||||||||||||| | | || |||||||||||||| ||||||| Sbjct 125893 ATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCA 125952 Query 176503 TACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGA 176562 || || || || || | || || | || ||||| | ||||||| | ||||| ||| Sbjct 125953 TATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTTTTGATCTATCCTATTGGTCAGGGA 126012 Query 176563 TCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTC 176622 || || |||||||||||||| || ||||||| ||| ||||| |||||| ||||||| Sbjct 126013 AGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGATACTTTCAATTTTATGATTGTATTT 126072 Query 176623 CAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTT 176682 || || |||| || ||||| ||||| ||||| || ||| | || ||||| ||||| || Sbjct 126073 CAGGCTAAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTC 126132 Query 176683 GGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTG-TTAGAGA 176741 || || || || ||| || ||| | || |||| || | || ||| | || || Sbjct 126133 GGCGGCTCCCTATTCAGTGCTATGTATGG-TTCCTTGGTAACTTTTAGTTTGATCAGGGA 126191 Query 176742 GACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGA 176789 || || ||||| ||||| || | ||||||| ||| || ||||| Sbjct 126192 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGA 126239 >seq29915 Length=314255 Score = 286 bits (316), Expect = 4e-72 Identities = 384/533 (72%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 ||||| || || || |||||||| ||| | |||| |||||| | || || || | || Sbjct 233403 CACTTTTATCCTATTTGGGAAGCGGCATCTATTGATGAATGGTTATATAACGGCGATCCT 233462 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAA 176454 || |||| |||| | |||||| | | ||| | ||||| ||||||| || | Sbjct 233463 TATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTACATGGGGCGTGAG 233519 Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 ||||||||||||| | | || |||||||||||||| ||||||||| || || || Sbjct 233520 TGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 233579 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || | || || | || |||||| | ||||||| | ||||| ||| || || ||| Sbjct 233580 GTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGAT 233639 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 ||||||||||| || ||||||||||| ||||| |||||| ||||||| || || ||||| Sbjct 233640 GGTATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCAT 233699 Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 || ||||| ||||| ||||| || ||| | || ||||| ||||| || || || || || Sbjct 233700 AATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 233759 Query 176695 TTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAAC 176754 ||| || ||||| || | || |||||| | | || || || || ||||| Sbjct 233760 TTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 233819 Query 176755 GAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCT 176814 ||||| || | ||||||| ||| || ||||| ||||| || || || ||||||||| Sbjct 233820 GAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCT 233879 Query 176815 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 || || ||||| ||||| || | |||||||| ||||| |||||| || || Sbjct 233880 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTC 233932 >seq6217 Length=83728 Score = 136 bits (150), Expect = 5e-27 Identities = 192/268 (72%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 176530 GCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGC 176589 || |||||| | ||||||| | ||||| ||| || || |||||||||||||| || Sbjct 30546 GCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGA 30605 Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 ||||||| ||| ||||| |||||| ||||||| || || |||| || ||||| ||||| Sbjct 30606 ATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCAT 30665 Query 176650 CCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCAC 176709 ||||| || ||| | || ||||| ||||| || || || || || ||| || ||||| Sbjct 30666 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 30725 Query 176710 GGAAGTCTTGTTACTTCTTCACTT---GTT-----AGAGAGACAACCGAAAACGAATCAC 176761 || | | ||| ||| | |||| ||| || || || || ||||| ||||| Sbjct 30726 GG--TTATGGTTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 30783 Query 176762 AAAACTACGGTTACAAATTCGGACAAGA 176789 || | ||||||| ||| || ||||| Sbjct 30784 CTAATGAAGGTTACAGATTTGGTCAAGA 30811 >seq5765 Length=69232 Score = 132 bits (146), Expect = 6e-26 Identities = 237/340 (70%), Gaps = 7/340 (2%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||| ||||| | || |||||||| || ||| | || | ||||| | | |||||||| Sbjct 23172 ACCCGTAACTATTCAATATCCTTATGAAAAAATAATCTCATCAGAACGTTTCCGTGGTCA 23231 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||| | ||| ||||| || || || || ||||| || ||||| | ||||| || || Sbjct 23232 AATACATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCCAT 23291 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAA--AGAAGAAAGAACTTAGA 19472 | ||||||| | || |||||| | | |||| || | | || ||| || || Sbjct 23292 CGATCTACCCATTGTTGATTGGAAACT--AGAAACTGATATTCAAAATAAATAATTTCTT 23349 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 |||||| || || || ||| ||||| || || ||||||| | || ||||| ||| Sbjct 23350 AATTATAGTATTGATTTCGGAATTTGTATATTTTGTGGTAACTATATTGAATATTGTCCA 23409 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGACAGACATCAACTT 19592 ||||| ||| |||| ||||| |||||||||||| | | || | ||| | || ||| || Sbjct 23410 ACAAATTGTTTATCAATGACCGAAGAATATGAACTTTCAACTTATGATCGCCA-CAAATT 23468 Query 19593 AACTT-TGATAACGTCGCTCTTGGACGATTGCCCACTAAT 19631 || || | || | | ||| |||| | ||| ||| |||| Sbjct 23469 AAATTATAATCAAATTGCT-TTGGGCCATTTACCAGTAAT 23507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603244176134400