Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq25741 87.8 1e-12 seq21796 87.8 1e-12 >seq25741 Length=849835 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||||||||| ||||| | || || || ||| | Sbjct 274806 ATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCT 274865 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| || ||||| || ||| |||| || | Sbjct 274866 GACACAATTGACAAT--GTGAAGGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 274923 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | ||||| || | || |||| Sbjct 274924 AGCAAAGGTTGATTTTTGCGGGAAAGCAGCTTGAAGATGGACGCACGCTGGCAGACTACA 274983 Query 27968 ACATCCAAAAAGAG 27981 |||| ||||| ||| Sbjct 274984 ACATTCAAAAGGAG 274997 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || ||| || |||| || || ||| | Sbjct 274350 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAGAGCTCT 274409 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || |||||||||||| | || || | Sbjct 274410 GACACTATTGACAAT--GTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACC 274467 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | |||||||| |||||||| | || || | || | | | ||||||||| Sbjct 274468 AACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGTACCCTTGCCGATTACA 274527 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || |||||| ||| | || |||| | ||| | ||||| ||| Sbjct 274528 ACATTCAGAAAGAGTCCACCCTCCACCTGGTGCTCCGTCTTCGTGGTGGC 274577 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||||||||| ||||| | || || || ||| | Sbjct 296408 ATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCT 296349 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| || ||||| || ||| |||| || | Sbjct 296348 GACACAATTGACAAT--GTGAAGGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 296291 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | ||| | || | || |||| Sbjct 296290 AGCAAAGGTTGATTTTTGCGGGAAAGCAGCTTGAAGATGGACGTACGCTGGCAGACTACA 296231 Query 27968 ACATCCAAAAAGAG 27981 |||| ||||| ||| Sbjct 296230 ACATTCAAAAGGAG 296217 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || || ||| | Sbjct 274578 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 274637 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || |||||||||||| | || || | Sbjct 274638 GACACTATTGACAAT--GTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACC 274695 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | |||||||| |||||||| | || || | || | |||| | ||||||| Sbjct 274696 AACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACA 274755 Query 27968 ACATCCAAAAAGA 27980 ||||||| ||||| Sbjct 274756 ACATCCAGAAAGA 274768 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || || ||| | Sbjct 296636 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 296577 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || |||||||||||| | || || | Sbjct 296576 GACACTATTGACAAT--GTCAAAGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACC 296519 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | |||||||| |||||||| | || || | || | |||| | ||||||| Sbjct 296518 AACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACA 296459 Query 27968 ACATCCAAAAAGA 27980 ||||||| ||||| Sbjct 296458 ACATCCAGAAAGA 296446 >seq21796 Length=372373 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||||| ||||| || || || |||| || || ||| | Sbjct 99089 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 99148 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || |||||||||||| | || || | Sbjct 99149 GACACTATTGACAAT--GTCAAAGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGACC 99206 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | |||||||| || ||||| | || || | || | |||| | ||||||| Sbjct 99207 AACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACA 99266 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || | || ||||| | ||| |||| || || Sbjct 99267 ACATCCAAAAAGAATCTACCCTCCACTTGGTGCTCCGTCTGCGCGGTGG 99315 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||||||||| ||||| | || || || ||| | Sbjct 99317 ATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCT 99376 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| || ||| |||| || | Sbjct 99377 GACACAATTGACAAT--GTGAAGGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 99434 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | ||| | || | || |||| Sbjct 99435 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACACTGGCAGACTACA 99494 Query 27968 ACATCCAAAAAGAG 27981 |||||||||| ||| Sbjct 99495 ACATCCAAAAGGAG 99508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355718539288590