Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq22486 100 2e-16 seq21071 100 2e-16 seq7180 100 2e-16 seq25741 91.5 1e-13 seq646 91.5 1e-13 seq21796 89.7 4e-13 seq3517 89.7 4e-13 >seq22486 Length=836894 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 787434 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 787375 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||| | || | || || |||||| ||| || Sbjct 787374 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 787315 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | || || |||||||| |||| |||||| |||| ||||| Sbjct 787314 GCCTTCA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCCAACGTGATCGTTTTACCCGT 787256 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 || ||||| || ||||| |||||| | |||||| Sbjct 787255 TAGGGTTTTCACGAAGATCTGCATCGTGACGCCG 787222 >seq21071 Length=2748687 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||| | || || ||| || ||||| || || || || Sbjct 2709155 CATGCCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTC 2709214 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 |||||| ||||| | || ||||||||||| |||||||| ||||| | ||||||||| || Sbjct 2709215 GGCAAGGGTTCGACCATCCTCAAGCTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGG 2709274 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 |||| | || || ||||| || || ||| | | | | || ||| |||| Sbjct 2709275 TGGGATCCCT-TCCTTGTCTTGAATCTTAGCTTTCACGTTATCGATGGTGTCGGAGGACT 2709333 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || | ||||| | || || |||| ||||| || ||||| ||||||| Sbjct 2709334 CCACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACGAAGATCTGCATCT 2709387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||||||| || ||| ||| || || ||||||||||| ||||| || || | || Sbjct 2708490 AACACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCAGCAAGAGTACGACCATCT 2708549 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || ||||| || || ||||| ||||| | ||||||||| | || | | |||||||||| Sbjct 2708550 TCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCTTTGTCC 2708609 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || || | | | | ||||| || || || | || || || Sbjct 2708610 TGTATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCAACTTCTAAAGTTATTGTT 2708669 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| || ||||||||||||||||| Sbjct 2708670 TTTCCGGTCAAAGTCTTAACAAAGATTTGCAT 2708701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| |||||||| || | ||||| |||| || ||| || || ||||| ||||| Sbjct 2708927 CATGCCACCTCTTAAACGAAGAACCAAGTGTAAGGTAGACTCCTTCTGAATATTGTAATC 2708986 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| |||| | | || ||||| ||||| || |||||||| | | |||||| || | Sbjct 2708987 AGCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAATATCAACCTCTGCTGATCTGG 2709046 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | ||| |||||| ||| || |||| | | | || || || || Sbjct 2709047 AGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGATTC 2709106 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| | || || |||| || || |||||||||||||| Sbjct 2709107 GACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 2709157 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || || || || || || || |||||||| ||||| |||||| | || Sbjct 2708718 AAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCTGCAAGGGTTCGTCCATCT 2708777 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||||||||| || ||||| ||||| | ||||||||| | ||| | | ||| || || Sbjct 2708778 TCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTATCT 2708837 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || ||| | | | | ||||| |||||| |||| ||||| | Sbjct 2708838 TGAATCTTGGCTTTCACATTGTCTATGGTATCTGAACTCTCCACCTCCAAGGTGATGGTC 2708897 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||||| || || || || || ||||| Sbjct 2708898 TTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 2708929 >seq7180 Length=1421306 Score = 100 bits (110), Expect = 2e-16 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || ||||||||||| ||||| || ||| | || |||||||| Sbjct 1039483 TGAAGCGTGGACTCCTTCTGAATATTATAATCTGCAAGCGTGCGTCCATCCTCAAGCTGC 1039424 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || |||||||||||||| || | || | | ||| || ||| ||| | | Sbjct 1039423 TTCCCTGCGAAGATAAGACGCTGCTGATCCGGTGGAATCCCCTCCTTATCC-TGAATCTT 1039365 Query 39202 TG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || || | | | | |||||| |||||| |||| || || ||||||| || Sbjct 1039364 TGCCTTCACGTTATCGATCGTATCAGAACTCTCCACCTCCAGAGTAATCGTTTTTCCGGT 1039305 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCCGAGCACAATGCAC 39306 ||||| || || ||||| |||||| | ||| ||| || | |||| Sbjct 1039304 GAGCGTCTTCACGAAGATCTGCATCCCTCCGCGGAG-ACGAAGCAC 1039260 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| || ||||| ||||| ||||||||||| |||| |||| || Sbjct 1039262 CACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCAAGGGTTCTGCCGTCTTC 1039203 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || || || || |||||||| ||||| || | || | | || || ||| Sbjct 1039202 CAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGAATACCTTCCTTATCCTG 1039143 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| ||| | | | | || || ||||| || || | ||| || |||| Sbjct 1039142 GATCTTCGCTTTCACGTTATCGATTGTGTCAGAGGACTCTACCTCTAGCGTAATCGTTTT 1039083 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCGAGCACAATGCAC 39306 || || || ||||| || ||||| |||||| | ||| ||| || | |||| Sbjct 1039082 GCCGGTTAGGGTTTTCACGAAGATCTGCATCCCTCCGCGGAG-ACGAAGCAC 1039032 >seq25741 Length=849835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| |||||| || || || ||||||||||| || || | || || Sbjct 274559 CACCAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCGGCAAGGGTACGGCCATCCTC 274500 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||| || ||||| || || | ||| ||||| |||||| | | |||||||| Sbjct 274499 AAGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGG-ATACCTTCTTTGTCTT 274441 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || || ||||| | | | || || ||| |||||| || | |||||| Sbjct 274440 GAATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCT---CTCCACCTCAAGGGTGATAG 274384 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || || |||||||||||||| Sbjct 274383 TCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 274350 >seq646 Length=2337744 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| ||||| || ||||| |||||||| || |||| |||| || Sbjct 1860368 CACCAGATGAAGCGTCGATTCTTTCTGAATATTGTAATCGGCGAGGGTTCTGCCGTCTTC 1860309 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || | ||||||||||| | || | || || |||||| Sbjct 1860308 GAGCTGTTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTG 1860249 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || || ||||| || || | ||| || |||| Sbjct 1860248 GATCTTAGCTTTCACGTTATCGATGGTGTCAGAGGACTCGACCTCTAGCGTAATCGTTTT 1860189 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| || ||||||||||| Sbjct 1860188 ACCGGTTAGGGTTTTGACGAAGATTTGCAT 1860159 >seq21796 Length=372373 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| ||| || || || || ||||| ||||| || || | || ||| Sbjct 98841 ACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCATCCTCA 98782 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || ||||| || || | ||| || || | || | | |||||||||| || Sbjct 98781 AGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGATCTGGAGGGATACCCTCTTTGTCC-TG 98723 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 | | | | | | ||| | || | | ||| ||| || || | ||||| | || Sbjct 98722 AATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCGACCTCAAGGGTGATTGTCTT 98663 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||||||| || |||||||||||||||||| Sbjct 98662 TCCCGTCAAGGTCTTAACAAAGATTTGCATC 98632 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || |||||||| || || ||||| || | ||||| | || || Sbjct 99298 CACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAGGTTCGGCCATCTTC 99239 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||||| ||||| || || | ||| ||||| |||||| | | ||||||||| Sbjct 99238 AAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGG-ATACCTTCTTTGTCCT 99180 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || || ||||| | | | || || ||| |||||| || | ||||| Sbjct 99179 GAATCTTGGCTTTGACATTGTCAATAGTGTCAGAGCT---CTCCACCTCAAGGGTGATGG 99123 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | ||||| || || || || ||||||||||||||| Sbjct 99122 TCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATC 99088 >seq3517 Length=1029689 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||| | ||| || || || ||||| || || ||||| Sbjct 706212 CATGCCACCCCTGAGGCGAAGCACGAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATC 706153 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 |||||| || || | || ||||| ||||| |||||||| ||||| | ||||||||| || Sbjct 706152 GGCAAGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGG 706093 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC 39231 |||| | || || |||| | ||| | | | || ||| | | | || ||| || Sbjct 706092 TGGGATCCCT-TCCTTGT-CTTGAATCTTAGCTTTTACGTTGTCAATGGTGTCGGAGGAT 706035 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| || | ||||| | || || |||| ||||| || || || ||||||| Sbjct 706034 TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTCACGAATATCTGCATCT 705980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429371952164210