Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq25741 116 3e-21 seq21796 116 3e-21 seq7180 114 9e-21 seq22486 104 2e-17 seq3517 98.7 7e-16 seq117 82.4 5e-11 >seq25741 Length=849835 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| ||||| || ||||| || || || || | | Sbjct 274350 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAGAGCTCT 274409 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || |||||||||||| | || ||||| || Sbjct 274410 GACACTATTGACAATGTCAAAGCTAAGA-TTCAAGACAAAGAAGGTATCCCACCAGACCA 274468 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || ||||| || || || | || || | | ||||||||| Sbjct 274469 ACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGTACCCTTGCCGATTACAA 274528 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 274529 CATTCAGAAAGAGTCCAC 274546 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| ||||| || ||||| || || || || | | Sbjct 274578 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 274637 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || |||||||||||| | || ||||| || Sbjct 274638 GACACTATTGACAATGTCAAAGCTAAGA-TTCAAGACAAAGAAGGTATCCCACCAGACCA 274696 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || ||||| || ||||| | || || || | |||||||| Sbjct 274697 ACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACAA 274756 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 274757 CATCCAGAAAGAATCTAC 274774 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| ||||| || ||||| || || || || | | Sbjct 296636 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 296577 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || |||||||||||| | || ||||| || Sbjct 296576 GACACTATTGACAATGTCAAAGCTAAGA-TTCAAGACAAAGAAGGTATCCCACCAGACCA 296518 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || ||||| || ||||| | || || || | |||||||| Sbjct 296517 ACAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCAGATTACAA 296458 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 296457 CATCCAGAAAGAATCTAC 296440 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || ||||| || || || ||||| || || || || | Sbjct 297320 ATGCAAATCTTTGTTAAGACACTCACTGGTAAGACAATCACCCTTGAGGTGGAGAGTTCA 297261 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| || ||| ||||| ||||| | || ||||| || Sbjct 297260 GATACCATAGATAATGTAAAGTCCAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAG 297201 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| ||||| || || || || | ||| || | | ||||||||| Sbjct 297200 CAACGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGACGTACACTTGCTGATTACAAC 297141 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| |||| || || Sbjct 297140 ATTCAAAAGGAGTCCACTCTACACTTGGT 297112 >seq21796 Length=372373 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| ||||| || ||||| || || || || | | Sbjct 99089 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 99148 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || |||||||||||| | || ||||| || Sbjct 99149 GACACTATTGACAATGTCAAAGCCAAGA-TTCAGGACAAAGAAGGTATCCCACCAGACCA 99207 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| |||||||| || ||||| | || || || | |||||||| Sbjct 99208 ACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAA 99267 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| || || Sbjct 99268 CATCCAAAAAGAATCTAC 99285 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| |||||||| || || || |||||||||||||| || | Sbjct 98405 ATGCAAATCTTCGTTAAGACCCTCACTGGTAAGACCATCACTCTCGAAGTCGAGAGTTCA 98464 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| |||||| ||||| ||||| | || |||||||| Sbjct 98465 GATACCATAGACAATGTAAAGGCCAAAATTCAAGACAAGGAAGGGATCCCACCAGATCAG 98524 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| ||||| || || || || | ||| || | | ||||| ||| Sbjct 98525 CAACGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGACGTACCCTTGCTGATTATAAC 98584 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| |||||||| | || || ||| Sbjct 98585 ATCCAAAAGGAGTCCACTCTCCACTTGGTT 98614 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || ||||| || || || ||||| || ||||| || || || || | | Sbjct 98860 AATGCAAATCTTTGTTAAGACTCTGACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTC 98919 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| |||| | || | || |||||||| ||| | || ||||||| Sbjct 98920 TGACACCATTGACAATGTTAAGGCCAAGA-TTCAGGACAAAGAGGGTATCCCACCAGATC 98978 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || ||||| || || || || ||||| | || || || | ||||||| Sbjct 98979 AACAGAGGCTCATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGAACCTTGGCTGATTACA 99038 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| |||||||| || || | || || ||| Sbjct 99039 ACATCCAAAAAGAATCTACCCTCCACTTGGTT 99070 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| ||| | |||||||| || ||||| || || || || | | Sbjct 98633 ATGCAAATCTTTGTTAAGACCTTGACGGGAAAGACAATCACCCTTGAGGTCGAGAGCTCC 98692 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | || |||||||| ||| | || |||||||| Sbjct 98693 GACACCATTGACAACGTTAAGGCTAAGA-TTCAGGACAAAGAGGGTATCCCTCCAGATCA 98751 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || || || || || || | || || | | |||||||| Sbjct 98752 ACAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTGCTGATTACAA 98811 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| | ||||| || Sbjct 98812 CATCCAGAAGGAGTCCACTCTTCATTTGGT 98841 >seq7180 Length=1421306 Score = 114 bits (126), Expect = 9e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 || || |||||||| ||||| |||||||| || || || |||||||| | || || || Sbjct 1038591 CTCAATATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACGATCACCTTGGAGGTGGAG 1038650 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 ||| | ||||| | || | | || ||||| ||||| || || | || || Sbjct 1038651 TCCTCTGACACCATCGACAACGTGAAGGCCAAAATCCAAGACAAGGAGGGCATTCCTCCG 1038710 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 |||||||||||||| || || ||||| ||||| || ||||||| | || | | ||| Sbjct 1038711 GATCAACAGCGTTTGATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGAC 1038770 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| ||||| |||||||| Sbjct 1038771 TACAACATCCAAAAGGAGTCCAC 1038793 >seq22486 Length=836894 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||||||||| | || || || || || Sbjct 787232 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACGTTGGAGGTGGAGTCTTCG 787291 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || || || || Sbjct 787292 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAG 787351 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || ||||| |||| ||||| | | ||| |||||| Sbjct 787352 CAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTACAAC 787411 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 787412 ATCCAGAAGGAGTCCAC 787428 >seq3517 Length=1029689 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || || ||||| || || || || ||| | Sbjct 705982 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 706041 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| || ||| ||||| ||||| | || || || || Sbjct 706042 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 706101 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || |||||||| || || | ||||| | | |||||||||| Sbjct 706102 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 706161 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 706162 ATCCAAAAGGAATCAAC 706178 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || || || ||||| || || || || ||| | Sbjct 701581 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 701640 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| || ||| ||||| ||||| | || || || || Sbjct 701641 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 701700 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || |||||||| || || | ||||| | | ||||||||| Sbjct 701701 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCTGATTACAAC 701760 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 701761 ATCCAAAAGGAATCAAC 701777 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || ||||| || || || || ||| || Sbjct 701809 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 701868 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | |||||||| || | || |||||||| Sbjct 701869 GACACCATTGATAATGTTAAGGCCAAGA-TCCAGGACAAAGAGGGCATCCCCCCAGATCA 701927 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| |||||||| || || | | | || | | |||||||| Sbjct 701928 GCAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAA 701987 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 701988 CATTCAGAAGGAATCCAC 702005 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || ||||| || || || || ||| || Sbjct 706210 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 706269 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | |||||||| || | || |||||||| Sbjct 706270 GACACCATTGATAATGTTAAGGCCAAGA-TCCAGGACAAAGAGGGCATCCCCCCAGATCA 706328 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| |||||||| || || | | | || | | |||||||| Sbjct 706329 GCAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAA 706388 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 706389 CATTCAGAAGGAATCCAC 706406 >seq117 Length=1280681 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || || || || ||| | || || ||||| || || || |||||| Sbjct 938257 GACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAA 938198 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | |||||| | | ||||| ||||||||||| || || ||| | || || || || Sbjct 938197 GATGGTCGCACTCTTGCTGATTATAACATACAAAAGGAATCAACACTTCACTTGGTCTTG 938138 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | | |||||| Sbjct 938137 AGGCTCAGGGGAGGA 938123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337872956450360