Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq20448 120 4e-22 seq10089 113 6e-20 seq27061 111 2e-19 seq25784 102 1e-16 seq26036 100 4e-16 seq10803 98.7 1e-15 seq13074 91.5 2e-13 seq6459 87.8 2e-12 >seq20448 Length=1126904 Score = 120 bits (132), Expect = 4e-22 Identities = 233/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || || || || ||||| || ||||||| || | |||||| || || ||||| Sbjct 920639 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 920580 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||||| ||||| || |||||||||||||| || ||| ||| || ||||| Sbjct 920579 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAA 920520 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC---GTTGTG 48316 ||| || || ||| || ||||| || | ||| || | || ||| | | Sbjct 920519 TATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAA---GGATTCTGAGGCATC 920463 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || | ||||| | || || || | | || || || || | ||| || Sbjct 920462 GATCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCG 920403 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||| ||| |||||||| || ||||| | ||| || |||| | || || ||||| Sbjct 920402 AAACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACAT 920343 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 ||||||||| |||||||| || || || || || ||||| ||| Sbjct 920342 TTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 920300 >seq10089 Length=680993 Score = 113 bits (124), Expect = 6e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | ||| ||||||||||| || |||||| | | ||| | | | | Sbjct 148585 GTTCCTGCATTGAAAAGTGTTGGAGATGCATGAGTGAACCATCTCTGAGACATCATGTGG 148644 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||| | ||| || || ||||| | ||||||||| || || || | ||||||| Sbjct 148645 TATGTTCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATCAAC 148704 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || |||||||| ||||| || ||| | | ||||| | |||||| | || | | Sbjct 148705 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTATGACCTCTCAAGA 148764 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || |||||| || || || || || Sbjct 148765 GTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATAGATTAT 148811 Score = 109 bits (120), Expect = 8e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||||||||||||||| || | |||||||| || ||||| |||| |||| || Sbjct 147727 TCTCTTTCATATTGAGTGTACAATTTCTCAAATTCTTCACCCCAGCAATCAGCCAAACCT 147786 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||| ||||| | ||| ||||| | |||| || ||||| || ||||||| Sbjct 147787 GGCGCTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAAG 147846 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||| | ||| |||||| ||| | |||||| | || ||| ||||| Sbjct 147847 AGATCAGACACCCAAAGAGCATAAAACAAATCTCGAGCTCGATGCTCTTC 147896 >seq27061 Length=934220 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | ||||||||||||||| ||||||||| || ||| | | | | Sbjct 848890 GTTCCAGCATTGAAAAGTGTCGGAGATGCATGAGTAAACCATCGTTGAGACATCATGTGG 848949 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || || || |||||||| | ||| ||||| || || || || | |||||| Sbjct 848950 TATGTTTTGATGGCAGAATCTATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 849008 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| ||||| || ||| | | ||||| | ||| || | || | Sbjct 849009 CATGTGTTGAGGCCTTTCCACAACCTTCCCTTGAACCTTCAAGAGGTAAGACCTCTCAAG 849068 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || |||||||| | || ||||||||| || || || || Sbjct 849069 GGTTTTGAATCCAAAATAATCATAGTCAAAGTCTCTGTCATAGATTAT 849116 Score = 105 bits (116), Expect = 9e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | ||| || | ||| | || | ||||||||||| ||| || Sbjct 848517 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCCA 848576 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || || |||||||| ||| ||||||||| || | || ||||| | | |||||| Sbjct 848577 TTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGAG 848636 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| || ||||| || Sbjct 848637 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATATC 848696 Query 78339 CCCTCTATACTGTCATCCATCAT 78361 ||||||||||| ||||| |||| Sbjct 848697 CCCTCTATACTATCATCTTTCAT 848719 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 |||||||||||| || ||| ||| ||||||| || |||||| |||| |||| || Sbjct 848062 TCTCTTTCATATCGATGATAAAGCTCCTCAAATTTCTCACCCCAACAATCAGCCAAACCT 848121 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||| | || || | ||| ||||| | |||| || ||||| || ||||||| Sbjct 848122 GGTGCTTCACTGGGACAAAACAAAGACCATTGGCCATTGCTCTGAACTCTTTCCATAAAG 848181 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| |||||||| | | ||| ||||| Sbjct 848182 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCGAGCACGATGCTCTTC 848231 >seq25784 Length=99802 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||||||||||||||||||||| | |||| ||| || || || ||||| Sbjct 38530 ACAAGCGAAATCACAATGAAGACCTTCATCGCGTGATATTAGTTCATTTGAGAAAGTGAG 38589 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 |||||||| |||||||||||||||||||| || | || ||| ||| || ||||| Sbjct 38590 TCCGGGCATGAGTCCACGTTTTTTGAGCCAGAAGACAGCGCAGAAGCTTCCGGAGAAGAA 38649 Query 48260 TATGCCTTC 48268 || ||||| Sbjct 38650 GATACCTTC 38658 >seq26036 Length=1795852 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||||||||||||| ||| ||| ||||||| || |||||| ||| ||| || Sbjct 175364 TCTCTTTCATATTGAAGATAAAGCTCCTCAAATTTCTCACCCCAACAATCTGTCAAACCC 175423 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||| | || || | ||| ||||| | |||| || ||||| || ||||||| Sbjct 175424 GGTGCTTCACTGGGACAAAACAAAGACCATTGGCCATTGCTCTGAACTCTTTCCATAAAG 175483 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| |||||||| | | ||| ||||| Sbjct 175484 AGATCAGGCACCCAGAGAGCATAAAACAGATCTCGAGCACGATGCTCTTC 175533 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | ||| || | ||| | || | |||||| |||| ||| || Sbjct 175823 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGGAACAATGCCA 175882 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||| ||| ||||||||| || | || ||||| | | ||| || Sbjct 175883 TTGGATGTCCCATTTGTCCCACGAATATAACTACCTGTAGCACGAATGTCATGAATAGAG 175942 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| || || || || Sbjct 175943 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATATC 176002 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||||||||| ||||| ||||| | ||| || || ||| Sbjct 176003 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 176044 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | ||||||||||||||| || |||||| || ||| | | | | Sbjct 176192 GTTCCAGCATTGAAAAGTGTCGGAGATGCATGGGTGAACCATCGTTGAGACATCATGTGG 176251 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| | ||| || |||||||| | ||| ||||| || || || || | |||||| Sbjct 176252 TAAGTTTTGACAGCAGAATCTATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 176310 Query 78518 CATATGCTGAGGTCTTTC---AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 78574 ||| || ||||| ||||| |||| | | | | ||||| | ||| || | || Sbjct 176311 CATGTGTTGAGGCCTTTCCAAAACCTGCCCTTGA---ACCTTCAAGAGGTAAGACCTCTC 176367 Query 78575 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| || |||||||| | || |||||| || || || || || Sbjct 176368 AAGGGTTTTGAATCCAAAATAATCATAGTCAAAGTCCCTGTCATAGATTAT 176418 >seq10803 Length=354954 Score = 98.7 bits (108), Expect = 1e-15 Identities = 229/343 (67%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || || || | ||||| || ||||||| || ||||| || || || ||||| Sbjct 196041 ACACGCGAAGTCGTAGTGAAGCCCCTCATCTCGCGAGATGAATTCATTGGAGAAGGTGAG 196100 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || | ||||| || || || |||||||||||||| || ||| | | || ||||| Sbjct 196101 CCCTGACATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTTCGGAGAAGAA 196160 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC---GTTGTG 48316 ||| |||| ||| | ||||| | || | ||| || | || ||| | || Sbjct 196161 TATTCCTTAGACGCAAGAGAATGCCATGAGGCGCTCCGCGAA---GGATTCTGAGGCGTT 196217 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||| || | | ||||| | || || || | | || || || || | ||| ||| Sbjct 196218 GATCTACTGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCACG 196277 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||| | ||| ||||||| || ||||| ||| || |||| | || || ||||| Sbjct 196278 AAACA-AAAATTTTTTTTTGTGGAGTCTTTGGTGTAGGTTTCTAAGAGGAGGCTGTACAT 196336 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 ||||||||| |||||||| || || || || || ||||| ||| Sbjct 196337 TTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 196379 >seq13074 Length=2244089 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462 ||| ||| || | ||| ||||||||||| ||||||||| | | ||| | | | ||| | Sbjct 1143900 CTGTATTGAAAAGTGTTGGAGATGCATGAGTAAACCATCTCTGAGACATCATGTGGTAAG 1143959 Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 || | ||| || || ||||| | ||||||||| || | || | ||||||||| | Sbjct 1143960 TTCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAACAACCCTCATCAACATGT 1144019 Query 78523 GCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582 ||||||| ||||| || ||| | | |||| | |||||| | || | |||| Sbjct 1144020 GCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAGGATGTATGACCTCTCAAGGGTTT 1144079 Query 78583 TAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | |||||||| || | || ||||||||| || || || || Sbjct 1144080 TGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATTAT 1144122 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAAC-----ATCATCCA 77952 ||||||||||| ||||| || || |||||||| || ||||| | |||| ||| Sbjct 1143061 TCTCTTTCATACTGAGTGTAGAGTTTCTCAAATTCTTCACCCCACCCTAGCAATCAGCCA 1143120 Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 | || || |||||| ||||| | ||| ||||| | |||| || ||||| || || Sbjct 1143121 AACCTGGCACTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCA 1143180 Query 78013 TAAAGAGATCAGGTATCCATAGAGCA-ATAAATAGATCTCG 78052 |||||| ||||| | ||| |||||| | ||| | |||||| Sbjct 1143181 TAAAGATATCAGACACCCAAAGAGCATAGAAAAAAATCTCG 1143221 >seq6459 Length=330141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||| || || || ||||| || | | ||| | |||||| || || ||||| Sbjct 144170 ACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGTGAG 144111 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| ||||| |||||||||||||| || || || ||| |||||| ||||| Sbjct 144110 CCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAGCGCAGAAGCTTCCAGAGAAGAA 144051 Query 48260 TATGCCTT 48267 || |||| Sbjct 144050 AATACCTT 144043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694380772948800