Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20soja_20[genbank_20GCA_5F000722935.2_202014-12-17] 33,170 sequences; 863,568,428 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq26036 134 2e-26 seq27061 123 4e-23 seq10089 113 6e-20 seq20448 107 3e-18 seq13074 98.7 1e-15 seq25784 93.3 6e-14 seq6459 91.5 2e-13 seq24414 86.0 9e-12 seq30896 84.2 3e-11 >seq26036 Length=1795852 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||| | ||| | || | |||||| |||| |||||| Sbjct 175823 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGGAACAATGCCA 175882 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| ||||||||| || |||||||| | | |||||| Sbjct 175883 TTGGATGTCCCATTTGTCCCACGAATATAACTACCTGTAGCACGAATGTCATGAATAGAG 175942 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 175943 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATATC 176002 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 176003 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 176044 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||||||||| ||| | | ||||||| || |||||| ||| |||||| Sbjct 175364 TCTCTTTCATATTGAAGATAAAGCTCCTCAAATTTCTCACCCCAACAATCTGTCAAACCC 175423 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||| | ||||| | ||| ||||| | |||| || ||| | || ||||||| Sbjct 175424 GGTGCTTCACTGGGACAAAACAAAGACCATTGGCCATTGCTCTGAACTCTTTCCATAAAG 175483 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | ||| |||||| ||| |||||||| Sbjct 175484 AGATCAGGCACCCAGAGAGCATAAAACAGATCTCG 175518 >seq27061 Length=934220 Score = 123 bits (136), Expect = 4e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||| | ||| | || | ||||||||||| |||||| Sbjct 848517 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCCA 848576 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||| ||| ||||||||| || |||||||| | | ||| || Sbjct 848577 TTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGAG 848636 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| || || || || Sbjct 848637 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATATC 848696 Query 76934 CCCTCTATACTATCATCCATCAT 76956 ||||||||||||||||| |||| Sbjct 848697 CCCTCTATACTATCATCTTTCAT 848719 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | ||| |||||||||||||| |||||| || ||| | | | | Sbjct 848890 GTTCCAGCATTGAAAAGTGTCGGAGATGCATGAGTAAACCATCGTTGAGACATCATGTGG 848949 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || | | ||||| || | ||| ||||| || ||||| || | |||||| Sbjct 848950 TATGTTTTGATGGCAGAATCTATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 849008 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| ||| | | ||||| | ||| || | || | Sbjct 849009 CATGTGTTGAGGCCTTTCCACAACCTTCCCTTGAACCTTCAAGAGGTAAGACCTCTCAAG 849068 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || |||||||| | || ||||||||| || || || || Sbjct 849069 GGTTTTGAATCCAAAATAATCATAGTCAAAGTCTCTGTCATAGATTAT 849116 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||||||| | ||| | | ||||||| || |||||| |||| ||||||| Sbjct 848062 TCTCTTTCATATCGATGATAAAGCTCCTCAAATTTCTCACCCCAACAATCAGCCAAACCT 848121 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||| | ||||| | ||| ||||| | |||| || ||| | || ||||||| Sbjct 848122 GGTGCTTCACTGGGACAAAACAAAGACCATTGGCCATTGCTCTGAACTCTTTCCATAAAG 848181 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | ||| |||||| ||| |||||||| Sbjct 848182 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCG 848216 >seq10089 Length=680993 Score = 113 bits (124), Expect = 6e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | ||| ||||||||||||||||||||| | | ||| | | | | Sbjct 148585 GTTCCTGCATTGAAAAGTGTTGGAGATGCATGAGTGAACCATCTCTGAGACATCATGTGG 148644 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||| | | | | || || || | ||||||||| ||||| || | ||||||| Sbjct 148645 TATGTTCTGACAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATCAAC 148704 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || |||||||| | ||| ||| ||| | | ||||| | |||||| | || | | Sbjct 148705 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTATGACCTCTCAAGA 148764 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| || || || || || Sbjct 148765 GTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATAGATTAT 148811 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||||||||| || || || |||||||| || ||||| |||| ||||||| Sbjct 147727 TCTCTTTCATATTGAGTGTACAATTTCTCAAATTCTTCACCCCAGCAATCAGCCAAACCT 147786 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||||| || || | ||| ||||| | |||| || ||| | || ||||||| Sbjct 147787 GGCGCTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAAG 147846 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||| | ||| |||||| ||| | |||||| | || | | ||||| Sbjct 147847 AGATCAGACACCCAAAGAGCATAAAACAAATCTCGAGCTCGATGCTCTTC 147896 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | || | || | || |||||||| ||| || Sbjct 148212 CCCCCTTGATCAACATAGCGAGCAGTATCGTTGAACACACGCAGCATTGGAACAATACCA 148271 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| || |||||||| |||||||| || || | Sbjct 148272 TTTGATGTCCCATTTGTGCCACGGATGTAACTTCCTGTGGCACGAATGTTGTGAACACTA 148331 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | ||||| ||||| |||||||| || Sbjct 148332 ACACCAATTCCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAAAGTGTCATATATT 148391 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 148392 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 148433 >seq20448 Length=1126904 Score = 107 bits (118), Expect = 3e-18 Identities = 232/346 (67%), Gaps = 12/346 (3%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || || || || ||||| || ||||||| || | |||||| || || ||||| Sbjct 920639 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 920580 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 ||| ||||||| |||||||| |||||||||||||| || ||| ||| || ||||| Sbjct 920579 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAA 920520 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACT----GGCATCATT 46802 ||| || || || |||||||| || || | ||| || | | | |||||| Sbjct 920519 TATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATC--- 920463 Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 ||||| | | ||||| | || ||||| | | || || || || | ||| || Sbjct 920462 ---GATCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGC 920406 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 ||| ||| |||||||| ||||| | || || |||| | || || || Sbjct 920405 GCGAAACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTA 920346 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTaaaaa 46968 |||||| || || || ||||| || || || || || ||||| ||| Sbjct 920345 CATTTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 920300 >seq13074 Length=2244089 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 1143525 CCCCCCTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACCA 1143584 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||| |||| || |||| ||||| || ||| |||| || |||| Sbjct 1143585 TTTGATGTCCCAGTTGTGGCACAAATGTAACTGCCTGTGGCATGAATGTTGTGAATACTA 1143644 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| ||| || | | |||| ||||| |||||||| || Sbjct 1143645 ACACCAATTCCTCCTGCTGATTTGCTAATGACAACACACTCCTTCAAAGTGTCATATATT 1143704 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||| ||| ||||| | ||| || || ||| Sbjct 1143705 CCCTCTATACTATAATCTTTCATGCACACAAGGAAGCAACTA 1143746 >seq25784 Length=99802 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || |||||||||||||| |||||||| | |||| ||| || || || ||||| Sbjct 38530 ACAAGCGAAATCACAATGAAGACCTTCATCGCGTGATATTAGTTCATTTGAGAAAGTGAG 38589 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 || ||||| |||||||| ||||||||||| || | ||| ||| ||| || ||||| Sbjct 38590 TCCGGGCATGAGTCCACGTTTTTTGAGCCAGAAGACAGCGCAGAAGCTTCCGGAGAAGAA 38649 Query 46749 TATGCCTTC 46757 || ||||| Sbjct 38650 GATACCTTC 38658 >seq6459 Length=330141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || ||||| || || || ||||| || | | ||| | |||||| || || ||||| Sbjct 144170 ACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGTGAG 144111 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 ||| ||||| ||||| || ||||||||||| || ||||| ||| |||||| ||||| Sbjct 144110 CCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAGCGCAGAAGCTTCCAGAGAAGAA 144051 Query 46749 TATGCCTT 46756 || |||| Sbjct 144050 AATACCTT 144043 >seq24414 Length=58567 Score = 86.0 bits (94), Expect = 9e-12 Identities = 117/163 (72%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 ||| || |||||| || || || ||||| |||||||||| || | ||||||||| | Sbjct 25146 ACAATAGACATGCGAAGTCGCAGTGAAGCCCTTCATCTCATGAGATGAGTTCGTTAGAGA 25087 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | |||||||| ||||| ||| ||| | |||||||||||| | | | ||||| Sbjct 25086 AGGTGAGCCC---CATTAACTCACACTTCTCGAGCCAAAATATCACACAGTAGCTTCCAG 25030 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 | |||||||| ||||| | |||||||| || || | ||| Sbjct 25029 AGAAGAATATTCCTTCGATGCAAGCGAATGCCACGAGGCGCTC 24987 >seq30896 Length=1964275 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| |||||||||||||||||||| ||||||||| |||| || || || ||||| | Sbjct 1739169 ACAAGCAAAATCACAATGAAGGCCCTCATCTCTAGAGATTAGCTCATTTGAGAATGTCAA 1739110 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 || ||||| | ||| | |||||| ||||| ||||| || Sbjct 1739109 ACCTGGCATCAATCCTCTCTTTTTAAGCCAGAATATGGC 1739071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712638799574400