Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq9 118 1e-21 >seq1 Length=147124936 Score = 138 bits (152), Expect = 1e-27 Identities = 322/478 (67%), Gaps = 7/478 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || || || |||||||| | || || |||| ||| | ||||| || | Sbjct 98687267 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 98687326 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || || ||||| || || || |||||||||||||||||| ||| || | Sbjct 98687327 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGG 98687386 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || ||||| || || ||| | || || |||||||| |||||||| | | || | Sbjct 98687387 AGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGC 98687446 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || |||||||| |||| |||||||||| | ||| || |||||| Sbjct 98687447 CGT--CG-ATCCATTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAG 98687503 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTATCGATGAGTAGG 17254 | || | || | | ||||| | || | || | ||||| || |||| ||| || Sbjct 98687504 TAGCGTGGAAGAGGCGGT-TTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGA 98687562 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGC 17313 || ||||| || ||||| || ||||| ||||| || || ||||| ||||| ||| || || Sbjct 98687563 CTATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAACGCA-CGCGC 98687621 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || || ||||| || || ||| || | || ||||||||| |||||||| || Sbjct 98687622 CTCTGCGATTTGGACCTCTTTCATGAAGCGAACGGCGAGATTTTCGAGGACGATGCCATC 98687681 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 | |||||||| || || | | ||| | ||||| | |||||| | |||||| Sbjct 98687682 GGATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGGTAAGA 98687739 >seq9 Length=96604005 Score = 118 bits (130), Expect = 1e-21 Identities = 383/587 (65%), Gaps = 11/587 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || |||||||| || || | || || |||| ||| | ||||| || | Sbjct 49336398 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 49336339 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || |||||||| || | || |||||||||||||| || ||| || | Sbjct 49336338 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGG 49336279 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || || || ||||| ||| | ||||| |||||||| ||||||||| | || | | Sbjct 49336278 AGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGC 49336219 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||||||| ||||||||||||||| | || || ||| || | Sbjct 49336218 CGT--CG-ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGA 49336162 Query 17196 TGGC-CTTAAATAATTTCTCTTTTTCCTGTAGG--TCGATTATATACGTATCGATGAGTA 17252 |||| | ||| | |||||| || || || |||| || || |||| || | Sbjct 49336161 TGGCGCGGAAAAGACGGTTCTTTT---CGTCGGAATCTTTTATGTAAGTCTCGAGAAGGA 49336105 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT-AAAAGCATCGG 17311 | |||||||| |||||||| || || || || || || || || || | ||||||| || Sbjct 49336104 GACTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGC 49336046 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || | ||||| || || ||| || | || || || || || ||||| Sbjct 49336045 GCCTCGGAGATTTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCA 49335986 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 ||| ||||| ||||| || | | || ||||||| | | ||||| | || ||| Sbjct 49335985 TCGGAGGCGGCAAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGA 49335926 Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 | ||||| | | | || | ||| ||||| || | ||||||||| || Sbjct 49335925 GCTTCCCAGTGACGAAGAACGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCT 49335866 Query 17492 ACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | || || || ||||| | ||| | || |||||| || ||||| Sbjct 49335865 TCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGGAA 49335819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517057690354920