Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9 122 9e-23 seq1 116 4e-21 >seq9 Length=96604005 Score = 122 bits (134), Expect = 9e-23 Identities = 385/585 (66%), Gaps = 15/585 (3%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| || || || || ||||| |||| ||| | ||||| || |||||||| Sbjct 49336390 CAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 49336331 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || |||||| || | || |||||||| ||||| ||| || || || || || Sbjct 49336330 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 49336271 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || ||||| || | |||||||||||||| ||||| ||| | || | | | || Sbjct 49336270 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT--CG- 49336214 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC-CTT 16440 ||||||||| |||| |||||||||| | ||| || ||| || ||||| | Sbjct 49336213 ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGG 49336154 Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 ||| | || ||||| | ||| |||| || || || | || | ||||||||| Sbjct 49336153 AAAAGACGGTTC-TTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACAT 49336095 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT-AGAAGCATCGAGCCTCCGCTA 16559 || ||||| || || || || || || || || |||| | ||||| || ||||| | | Sbjct 49336094 CTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGA 49336036 Query 16560 TTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 |||| | ||| || | || || | || ||||||||| || || || || | Sbjct 49336035 TTTGGACCTCTTTCATG---AACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGG 49335979 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | |||||||| || | | ||| ||||||| | | ||||||| || ||| | || Sbjct 49335978 CGGCAAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCC 49335919 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | | | | || | ||| ||||| |||| |||||||| || | || | Sbjct 49335918 AGTGACGAAGAACGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTT 49335859 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTAT-GGGAA-ATAC 16779 | || ||||||| ||| | || |||||| || ||||| |||| Sbjct 49335858 TCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGGAACATAC 49335814 >seq1 Length=147124936 Score = 116 bits (128), Expect = 4e-21 Identities = 254/373 (68%), Gaps = 13/373 (3%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || ||||||||||| || ||||| |||| ||| | ||||| || |||||||| Sbjct 98687275 CAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT 98687334 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAAGA 16319 || |||||| || || || |||||||| ||||| ||||| || || || || || | Sbjct 98687335 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTG--CCGGAGAAAA 98687392 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA--CGTAGCATCTTTATT 16377 |||| || || || | || ||||||||||| ||||| || | | | || | | Sbjct 98687393 ATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGT--- 98687449 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 || |||||||| |||| |||||||||| | || || |||||| | || Sbjct 98687450 -CG-ATCCATTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGC 98687507 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | || | | |||||| ||| | ||||| || || | || | ||| || Sbjct 98687508 GTGGAAGAGGCGGTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACTATA 98687567 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCCG 16556 ||| || ||||| || ||||| ||||| || || |||||||| || ||| || ||||| | Sbjct 98687568 CATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAACGCA-CGCGCCTCTG 98687626 Query 16557 CTATTTGTACTTC 16569 | ||||| || || Sbjct 98687627 CGATTTGGACCTC 98687639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510932270467080