Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq12 104 2e-17 seq10 89.7 4e-13 seq7 86.0 5e-12 >seq12 Length=146008498 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || |||||||| || || ||| | Sbjct 12766685 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 12766626 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || ||||| || ||| || |||||||| | || |||||| Sbjct 12766625 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 12766566 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || || || || |||||| |||||||| | ||| |||| ||||||||| Sbjct 12766565 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 12766506 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||||||||| ||||| ||| | || || || Sbjct 12766505 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 12766471 >seq10 Length=114683840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || || || ||||| ||| ||| | | Sbjct 64670998 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCG 64670939 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | || || ||| || |||||||| | || |||||| Sbjct 64670938 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 64670879 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| || |||||||||||||| | ||| |||| ||||||||| Sbjct 64670878 CAAAGGTTGATTTTTGCTGGGAAACAACTGGAAGACGGAAGGACTTTGGCTGATTACAAT 64670819 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 ||||| ||||| || ||||||||| Sbjct 64670818 ATTCAAAAGGAGTCCACTCTTCAC 64670795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| | ||||| | |||||||| ||||| ||| ||| |||| | Sbjct 38459768 ATGCAGATATTTGTGAAAACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 38459827 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| || || || || ||||| | || ||| ||| Sbjct 38459828 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAA 38459887 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || |||||||| |||||| | ||| | || |||||||| Sbjct 38459888 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGAACCCTCGCTGATTACAAC 38459947 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || ||||| || ||||| || ||| Sbjct 38459948 ATCCAGAAAGAGTCTACCCTCCAC 38459971 >seq7 Length=127721098 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || ||||| ||||| ||| ||| ||| || Sbjct 86219704 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGTTCA 86219763 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || ||||| ||||| | || ||||| Sbjct 86219764 GACACCATTGATAATGTGAAGGCTAAGATCCAAGATAAGGAAGGGATCCCACCGGATCAG 86219823 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| ||||||||||| || ||| | || | ||||| ||||| Sbjct 86219824 CAGAGGCTTATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACGCTAGCCGACTACAAC 86219883 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| || |||||| |||| | ||| | || || || Sbjct 86219884 ATTCAGAAAGAATCCACCCTTCACTTGGTTCTTCGACTTCGTGGCGG 86219930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427942286800445