Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28]
75,419 sequences; 1,694,597,732 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq11 102 7e-17
seq12 100 2e-16
seq10 89.7 4e-13
>seq11
Length=105699404
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || || |||| || ||||| |||||||| || ||| || ||| | |
Sbjct 76982804 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 76982863
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || | ||| ||| ||| ||||| ||||| | || |||||
Sbjct 76982864 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 76982923
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||||| || |||||||| |||||||||||||||||| | ||| |||| ||||| ||
Sbjct 76982924 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 76982983
Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238
||||| || || ||||| ||||||
Sbjct 76982984 ATTCAGAAAGAGTCTACCCTTCAC 76983007
>seq12
Length=146008498
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| |||| || ||||| || |||||||| || || ||| |
Sbjct 12766685 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 12766626
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| ||| | | | || | ||| || ||| || |||||||| | || ||||||
Sbjct 12766625 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 12766566
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||||| | || || || || ||||||||||||||| | ||| |||| |||||||||
Sbjct 12766565 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 12766506
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
||||| |||||||| ||||| ||| | || || ||
Sbjct 12766505 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 12766471
>seq10
Length=114683840
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| |||| || ||||| || || || ||||| ||| ||| | |
Sbjct 64670998 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCG 64670939
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| ||| | | | | || || ||| || |||||||| | || ||||||
Sbjct 64670938 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 64670879
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||||| | || ||||| || |||||| ||||||| | ||| |||| |||||||||
Sbjct 64670878 CAAAGGTTGATTTTTGCTGGGAAACAACTGGAAGACGGAAGGACTTTGGCTGATTACAAT 64670819
Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238
||||||||||| || |||||||||
Sbjct 64670818 ATTCAAAAGGAGTCCACTCTTCAC 64670795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410419208290466
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |