Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7 113 7e-20 seq12 104 3e-17 seq10 104 3e-17 >seq7 Length=127721098 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | |||||| || || ||||||||||| | | Sbjct 86220386 CCACCACGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCA 86220327 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | ||||||||||||||||||||||||||| || || || || Sbjct 86220326 AGAGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG 86220267 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 86220266 ATTCCTTCTTTGTCCTG 86220250 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | || |||||||| | |||||||| ||| || || ||||| |||| Sbjct 44509728 CCACCACGAAGACGCAACACCAAATGGAGGGTAGATTCCTTTTGA-ATGTTATAGTCTGC 44509786 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||||| ||| || | |||||| ||||||||||| || || ||||| || || || Sbjct 44509787 AAGGGTTCTGCCATCTTCAAGTTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCTGGTGG 44509846 Query 146170 AATTCCTTCTTTATCTTG 146187 || || || || || || Sbjct 44509847 GATGCCCTCCTTGTCCTG 44509864 >seq12 Length=146008498 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||||||| ||||| || | || | ||| || || || || |||||||| Sbjct 139205551 GTTCCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 139205610 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| |||| ||| || |||||||||||||| || |||||||| ||| Sbjct 139205611 GCTAGGGTTCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGA 139205670 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || |||||||| || Sbjct 139205671 GGGATGCCCTCTTTATCCTG 139205690 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| ||||| ||||| || | || | ||| || || || || |||||||| Sbjct 139210771 GTTCCACCCCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCA 139210830 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| || ||| || | ||| || |||||||||||||| || |||||||| ||| Sbjct 139210831 GCTAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGA 139210890 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 139210891 GGGATGCCTTCTTTATCCTG 139210910 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || || | || | ||| ||||| || ||||| ||||| | Sbjct 12766459 CCACCACGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCC 12766518 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| || | ||| || |||||||| ||||| |||||||| ||||||||||| || ||| Sbjct 12766519 AAAGTCCTTCCATCTTCCAATTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGA 12766578 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 12766579 ATTCCTTCTTTGTCCTG 12766595 >seq10 Length=114683840 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||| ||| |||||||| | || ||||| || || |||||||| | | Sbjct 38466678 CCACCACGGAGTCGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAATCAGCA 38466619 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || ||| || | || ||||||||||||||||| || ||||| ||||| || Sbjct 38466618 AGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGG 38466559 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 38466558 ATCCCTTCCTTATCCTG 38466542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | |||| | ||||| || | ||||| ||||| ||||||||||||| Sbjct 38466908 TTCCACCACGCAGTCGGAGCACCAAGTGAAGGGTAGACTCTTTCTGGATATTATAATCTG 38466849 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | ||||| |||||||||||||| || |||||||| || | Sbjct 38466848 CAAGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGTG 38466789 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || || || Sbjct 38466788 GAATCCCTTCCTTGTCCTG 38466770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | |||| | ||||| || | ||||| ||||| ||||||||||||| Sbjct 38472620 TTCCACCACGCAGTCGGAGCACCAAGTGAAGGGTAGACTCTTTCTGGATATTATAATCTG 38472561 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | ||||| |||||||||||||| || |||||||| || | Sbjct 38472560 CAAGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGTG 38472501 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || || || Sbjct 38472500 GAATCCCTTCCTTGTCCTG 38472482 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||||||| | || |||||||| | || ||||| || || ||||| || | Sbjct 38460680 TTCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCCG 38460621 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | || ||||| ||||||||||| || ||||| || |||| Sbjct 38460620 CAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAG 38460561 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| || || || || Sbjct 38460560 GAATTCCCTCCTTGTCCTG 38460542 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||||| || |||||||| | || ||||| || || |||||||| | | Sbjct 38467134 CCTCCTCGAAGTCGCAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAATCCGCA 38467075 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | || ||||||||||||||||| || ||||| || || || Sbjct 38467074 AGGGTCCTCCCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 38467015 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || |||||||| Sbjct 38467014 ATACCCTCCTTATCTTG 38466998 Score = 89.7 bits (98), Expect = 8e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 ||||| ||||| || || ||||||| ||| || || | ||| || | ||||||||| Sbjct 38472132 GTAGACTCTTTCTGGATGTTGTAATCTGCAAGTGTCCTACCATCTTCGAGTTGTTTTCCG 38472073 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| || |||||||| || ||||| ||||| || ||||| Sbjct 38472072 GCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTG 38472026 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | ||| |||||||| | || ||||| || || ||||| || | | Sbjct 38472390 CCACCACGGAGACGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCA 38472331 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || ||| || | || ||||||||||||||||| || ||||| ||| | || Sbjct 38472330 AGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCAGTGGG 38472271 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 38472270 ATCCCTTCCTTATCCTG 38472254 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||||| || |||||||| | || ||||| || || |||||||| | | Sbjct 38472846 CCTCCTCGAAGTCGCAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAATCCGCA 38472787 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | || ||||||||||||||||| || ||||| || || || Sbjct 38472786 AGGGTCCTCCCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 38472727 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || |||||||| Sbjct 38472726 ATACCCTCCTTATCTTG 38472710 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| ||||| || |||||||| | || ||||| || || |||||||| | | Sbjct 38473074 CCTCCTCGAAGTCGCAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAATCCGCA 38473015 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || | || ||||||||||||||||| || ||||| || |||||| Sbjct 38473014 AGGGTCCTCCCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGA 38472955 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || || || Sbjct 38472954 ATCCCCTCCTTGTCCTG 38472938 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || ||||| ||||| | | ||| || | || || | |||||| |||||||||| Sbjct 64670810 CTTTTGA-ATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGTTTCCCAGCAAAAA 64670868 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||| ||||||||||| || |||||||||||||| || || Sbjct 64670869 TCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTG 64670908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742825449780480