Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-21 >seq9 Length=96604005 Score = 116 bits (128), Expect = 3e-21 Identities = 365/559 (65%), Gaps = 15/559 (3%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||| |||||||| || | ||||| || | |||||||||||||| || || | Sbjct 49336390 CAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 49336331 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA---CCAGAAAAG 16351 || ||||||| || | ||||| | ||||||||| |||| | || || || || Sbjct 49336330 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT---GGCACAGAAACTTCCGGAGAAA 49336274 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || || || || || ||||| || | || || || || | ||| | | | Sbjct 49336273 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTT---TCTCCGCCG 49336217 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471 || |||||||| ||||||| | ||||||| ||||| || |||| || || Sbjct 49336216 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 49336157 Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 || | | || ||||| | | |||| || ||||| || | || | ||| ||| Sbjct 49336156 CGGAAAAGACGGTTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 49336097 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCGGA 16590 || || || || ||||| || || || || || ||||||| ||||||| | || ||||| Sbjct 49336096 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 49336038 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 ||||| || || |||| | || | ||| || ||||| |||||| || Sbjct 49336037 GATTTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 49335978 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTTAAC 16708 |||||||| || || | ||| |||| || | | |||| | | ||| || || | Sbjct 49335977 GGCAAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTT--CC 49335920 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 |||| | || | | || | |||||| || ||| | |||||||| || || | || Sbjct 49335919 CAGTGACGAAGAACGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCT 49335860 Query 16769 TTTTTATACATTTTCCATA 16787 || || ||||||| ||||| Sbjct 49335859 TTCTTGTACATTTCCCATA 49335841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462075972593400